BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949571
Length=724
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50115.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular... 315 5e-85
> AT5G50115.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular
chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609);
BEST Arabidopsis thaliana protein match is: Molecular
chaperone Hsp40/DnaJ family protein (TAIR:AT5G50510.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:20379489-20381036 FORWARD LENGTH=1458
Length=1458
Score = 315 bits (170), Expect = 5e-85
Identities = 280/331 (85%), Gaps = 15/331 (5%)
Strand=Plus/Plus
Query 322 CTCAAGACTCGAAGAA-AAGCAATGCAGCCAAAAGAGTAAAG--T-GCGAAAGCAAGAAC 377
||| |||||| ||||| | | ||||||| |||||||||||| | |||| |||||||
Sbjct 698 CTCTAGACTCAAAGAAGTA-CGATGCAGCGAAAAGAGTAAAGATTAATGAAACCAAGAAC 756
Query 378 ACTAAC-GATGTGAT-TATGGAGGAGGAATATGATTTAATGGCT-ATGAGTGTTCCAGAT 434
||| || || || | || ||||| || ||| || | ||| | |||||||| || |||
Sbjct 757 ACT-ACTCATATGGTGAAT-GAGGATGAGTATAATGTGGTGG-TAATGAGTGTGCCGGAT 813
Query 435 GCTGATTTCTACAACTTCGAAAAGGATCGG-GTCGAAGCTTC-TTTCGGAGAAAACCAAG 492
||||||| |||||||||||| ||||||||| || |||||| ||| ||||||||||| |
Sbjct 814 GCTGATTACTACAACTTCGACAAGGATCGGACTC-TAGCTTCGTTT-GGAGAAAACCAGG 871
Query 493 TATGGGCTGCTTATGATGATTACGGAATGCCTCGGTGGTATGCATTGGTCCATAAGGTTG 552
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 872 TATGGGCTGCTTACGATGATTACGGAATGCCTCGGTGGTATGCATTGGTCCATAAGATTG 931
Query 553 TTTCTCAAGAACCGTTCAAGACGTGTATTTCTTGGCTTGATGGAAAGAAAAATGGATATG 612
| ||||||||||||||| || ||||||||||||||||||||| ||||| || ||||||
Sbjct 932 TCTCTCAAGAACCGTTCGAGTTGTGTATTTCTTGGCTTGATGGCAAGAATAAGGGATATA 991
Query 613 TGGGTTCAATGAAGAAGTGGATTGATTCAGG 643
||||||||||||||||||||||||||||||
Sbjct 992 CGGGTTCAATGAAGAAGTGGATTGATTCAGG 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35113668753
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5