BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949585

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G66235.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   285    2e-76


> AT1G66235.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G24380.1); 
Has 283 Blast hits to 282 proteins in 34 species: Archae - 
0; Bacteria - 19; Metazoa - 15; Fungi - 0; Plants - 234; Viruses 
- 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:24683006-24683874 
REVERSE LENGTH=798
Length=798

 Score =  285 bits (154),  Expect = 2e-76
 Identities = 269/320 (84%), Gaps = 25/320 (8%)
 Strand=Plus/Plus

Query  29   TTCAATCAAGCGAAAGAAATGCTAATGCAAGATCAAA-ATTTCAAATCTGGTTGGAAATT  87
            ||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct  229  TTCAATCAAGCAAAAGAAATGCTAATGCAAGAT-AAACATTTCAAATCTGGTTGGAAATT  287

Query  88   TGATCATGTGTGGAACATTATTAAAAACTTTGAAAAGTTTAAAGATGGTGCCACTCC-GA  146
            ||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||  | 
Sbjct  288  TGATCATGTATGGAACATTATTAGAAACTTTGAAAAGTTTAAAGATGGTGCTACTCAAG-  346

Query  147  CTAGAAAAGTATCAAATCTATGCGGTTTCGGATATACATCTTCAGAGTCGGAAAATCCTA  206
            ||| |||||| | |||||||||||| || | | | | |||  |    |   |    ||  
Sbjct  347  CTAAAAAAGTCTTAAATCTATGCGGATTAG-A-A-A-ATC--C----T---A----CC--  387

Query  207  CTCCCGATTCTGTTACATAAGCGTCTCCAGGTTTGTCTTCGTTTTCTCTTAATTTAGATG  266
            |||  ||||||||| || |||||||| |||||| || ||| ||||||||||| |||||||
Sbjct  388  CTC--GATTCTGTTTCACAAGCGTCTTCAGGTTCGTTTTCATTTTCTCTTAACTTAGATG  445

Query  267  ACGAAGATGACATTATTGGCGGATCTCCATCTCAACGACCAAGTGGAGTGaaaaaataaa  326
            | |||||||||||||||||  ||||||||| ||||||||||| | |||||||||| | ||
Sbjct  446  ATGAAGATGACATTATTGGAAGATCTCCATATCAACGACCAATTAGAGTGAAAAAGTCAA  505

Query  327  aattgaaaagaaaaaaCGAT  346
            |||||||||||||||| |||
Sbjct  506  AATTGAAAAGAAAAAATGAT  525



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16186215178


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5