BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949587
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50420.1 | Symbols: | O-fucosyltransferase family protein |... 2734 0.0
AT1G17270.1 | Symbols: | O-fucosyltransferase family protein |... 1219 0.0
> AT5G50420.1 | Symbols: | O-fucosyltransferase family protein
| chr5:20530206-20532856 REVERSE LENGTH=2169
Length=2169
Score = 2734 bits (1480), Expect = 0.0
Identities = 1652/1737 (95%), Gaps = 3/1737 (0%)
Strand=Plus/Plus
Query 10 TTCACTCTTCGGCGATGGAGCGAAACTCGTCGGACGATGAAGAAGACCACCAGCATTTGA 69
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 208 TTCACTCTTCGGCGATGGAGCGAAACTCGTCGGACGACGAAGAAGACCACCAGCATTTGA 267
Query 70 TTCCCCAAAACGATACTCGAATCCGTCACCGGGAAGATCCAATTTCCTCCACCGCCA-CA 128
||||||||||||| |||||||||||||||||||| ||| || ||||||||| ||||| ||
Sbjct 268 TTCCCCAAAACGACACTCGAATCCGTCACCGGGAGGATTCAGTTTCCTCCAACGCCACCA 327
Query 129 CCAACCGGCGGGAATCAGAGATCGGCGTTTCAGATCGAAGACATTTTGCAGAGAGTTCAA 188
||| ||||||||||||||||||||||||||||||||| |||||||| || |||| |||
Sbjct 328 -CAATCGGCGGGAATCAGAGATCGGCGTTTCAGATCGACGACATTTTACATCGAGTCCAA 386
Query 189 CGCCGTTGGAAGATCTCGCTCAATAAGCGTTACGTCATTGTCTTCGTCTCTCTAATTATC 248
| |||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 387 CACCGTGGGAAGATCTCGCTCAACAAGCGTTACGTCATTGTCTTCGTTTCTCTAATTATC 446
Query 249 TCAATCGGTCTTCTCTTCTTACTCACTGATCCTCGTGAACTATTTTCTGCGAATTTCTCG 308
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 447 TCAATCGGTCTTCTCTTCTTACTCACTGATCCTCGTGAACTATTTGCGGCGAATTTCTCG 506
Query 309 AGTTTTAAGCTGGATCCATTGTCGAATCGTGTCAAGGAATCTGAGCTTCGTGCTTTGTAT 368
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 507 AGTTTTAAGCTGGATCCATTGTCGAATCGTGTCAAAGAATCTGAGCTTCGTGCTTTGTAT 566
Query 369 CTTCTGAGACAACAACAGCTTGCGCTTCTCTCTCTTTGGAACGGTACGTTGGTGAATCCT 428
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 567 CTTCTGAGACAACAACAGCTCGCGCTTCTATCTCTTTGGAATGGTACGTTGGTGAATCCT 626
Query 429 TCTCTTAATCAATCGGAGAATGATTTGAGATCGTCTGTGTTGTTTGAGGATGTGAAATCT 488
|||||||||||||| ||||| | |||| |||||||||| |||||||||||||||||||||
Sbjct 627 TCTCTTAATCAATCTGAGAACGCTTTGGGATCGTCTGTTTTGTTTGAGGATGTGAAATCT 686
Query 489 GCTGTATCGAAGCAGATTTCATTGAATAAGGAGATCCAAAATGTGCTTCTATCACCACAC 548
||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 687 GCTGTTTCGAAGCAGATTTCATTGAATAAGGAGATCCAAGAGGTGCTTCTATCACCACAC 746
Query 549 AGGAGTAGCAATTACTCCGGTGGCACGGAAGTTGATTCGGTGAATTTCTCATACGATAGA 608
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 747 CGGAGTAGCAATTACTCCGGTGGCACCGATGTTGATTCGGTGAATTTCTCATATAATAGA 806
Query 609 TGTAGAAAAGTGGATCAGAAGTTGTCAGATCGGAAAACTGTAGAGTGGAAGCCGAGATCG 668
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 807 TGTAGAAAAGTGGATCAGAAGTTGTCAGATCGGAAAACTGTAGAGTGGAAGCCTAGATCT 866
Query 669 GATAAGTTTCTATTCGCTATATGTCTCTCAGGTCAAATGAGTAACCATTTGATTTGCTTA 728
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 867 GATAAGTTTCTATTCGCTATTTGTCTCTCAGGTCAAATGAGTAACCATTTGATATGTTTA 926
Query 729 GAGAAACATATGTTCTTTGCTGCATTGTTGGATCGAGTTTTGGTGATACCTAGCTCAAAG 788
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 927 GAGAAACATATGTTCTTTGCTGCATTGCTGGATCGAGTTTTGGTGATACCTAGCTCTAAG 986
Query 789 TTTGATTACCAGTATGATAGAGTGATAGACATAGAGCGGATTAATACTTGCTTGGGACGA 848
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct 987 TTTGATTACCAGTATGATAGAGTGATAGATATAGAGCGGATTAACACTTGCTTGGGAAGA 1046
Query 849 AATGTTGTTGTTTCTTTTGATCAATTTAAGGAAAAGGCGAAAAAGAATCATTTTCGTATT 908
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1047 AATGTTGTTGTTGCTTTTGATCAGTTTAAGGAAAAGGCGAAAAAGAATCATTTTCGGATT 1106
Query 909 GACCGGTTCATATGTTACTTCTCGTCACCACAGCTTTGTTATGTGGATGAGGAGCATATT 968
|| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 1107 GATCGGTTCATATGTTACTTTTCATCACCACAGCTTTGTTATGTGGATGAGGAACATATT 1166
Query 969 AAGAAGCTGAAAGGTTTGGGGATTTCCATTGATGGGAAGCTTGAGGCTCCTTGGAGTGAA 1028
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 AAAAAGCTGAAAGGTTTGGGGATTTCCATTGATGGGAAGCTTGAGGCTCCTTGGAGTGAA 1226
Query 1029 GACATAAAGAAGCCGAGCAAGAGAACTGTGCAAGACGTACAGACAAAGTTTAAGTCTGAT 1088
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1227 GACATAAAGAAGCCGAGCAAGAGAACTGTGCAAGACGTCCAGATGAAGTTTAAGTCTGAT 1286
Query 1089 GATGACGTGATCGCCATCGGGGATGTTTTCTATGCTGATATGGAGCAAGATTGGGCGATG 1148
||||| ||||| || ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1287 GATGATGTGATTGCAATCGGGGATGTCTTCTATGCTGATATGGAGCAAGATTGGGTGATG 1346
Query 1149 CAGCCTGGTGGACCTATTAACCACAAGTGCAAGACCCTGATCGAACCCAGTAAGCTGATT 1208
|| |||||||||||||||||||||||||| ||||| || |||||||| |||||||||||
Sbjct 1347 CAACCTGGTGGACCTATTAACCACAAGTGTAAGACACTAATCGAACCTAGTAAGCTGATC 1406
Query 1209 TTGTTGACCGCACAGAGATTCATCCAGACCTTCTTGGGAAAGAATTTCATCGCACTTCAT 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TTGTTGACCGCACAGAGATTCATCCAGACCTTCTTGGGAAAGAATTTCATCGCACTTCAT 1466
Query 1269 TTTCGCAGACATGGGTTCCTCAAATTCTGCAATGCAAAATCTCCAAGTTGCTTCTATCCA 1328
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1467 TTCCGCAGACATGGGTTCCTCAAATTTTGCAATGCAAAATCGCCAAGTTGCTTCTATCCA 1526
Query 1329 ATTCCACAAGCTGCAGAGTGCATCGCTCGGATAGTGGAAAGATCCAATGGCGCAGTCATC 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 ATTCCACAAGCTGCAGAGTGCATCGCTCGGATAGTGGAAAGATCCAATGGCGCAGTCATC 1586
Query 1389 TATCTTTCAACAGATGCTGCAGAAAGTGAAACAAGTCTGCTTCAGTCACTTGTTGTGGTA 1448
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1587 TATCTTTCAACAGATGCTGCAGAAAGTGAGACAAGTCTGCTTCAGTCACTTGTTGTGGTA 1646
Query 1449 GATGGAAAAATTGTGCCTCTTGTCAAACGTCCACCTCGTAATTCAGCTGAAAAGTGGGAC 1508
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1647 GATGGAAAAATTGTGCCTCTTGTCAAACGTCCACCGCGTAATTCAGCTGAAAAGTGGGAT 1706
Query 1509 GCATTGTTATATCGACATGGTATAGAGGATGACTCTCAGGTGGATGCAATGCTTGATAAA 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 GCATTGTTATATCGACATGGTATAGAGGATGACTCTCAGGTGGATGCAATGCTTGATAAA 1766
Query 1569 ACAATATGCGCCATGTCCAGCGTCTTCATTGGAGCCTCGGGATCAACTTTCACAGAGGAT 1628
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1767 ACGATATGCGCCATGTCCAGCGTATTCATTGGAGCCTCGGGATCAACTTTCACAGAAGAT 1826
Query 1629 ATCTTGAGACTAAGGAAAGATTGGGGAACATCCTCTACATGCGATGAGTACCTCTGTCGA 1688
|| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1827 ATATTGAGGCTAAGGAAAGATTGGGGAACATCCTCTACGTGCGATGAGTACCTCTGCCGA 1886
Query 1689 GGAGAAGAGCCAAACTTCATAGCAGAAGATGAATAAGTAAGCACATCTTTTTTCTTA 1745
|| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1887 GGGGAAGAGCCAAACTTTATAGCAGAAGATGAATAAGTAAGCACAT-TTTTTTCTTA 1942
> AT1G17270.1 | Symbols: | O-fucosyltransferase family protein
| chr1:5909249-5911693 REVERSE LENGTH=1958
Length=1958
Score = 1219 bits (660), Expect = 0.0
Identities = 1319/1626 (81%), Gaps = 90/1626 (6%)
Strand=Plus/Plus
Query 135 GGCGGGAATCAGAGATCGGCGTTTCAGATCGAAGACATTTTG-CAGAGAGTTC--AACGC 191
||| ||| || |||||||||||| |||||||| || || ||| | | ||| || ||
Sbjct 193 GGCAGGAGTCCGAGATCGGCGTTACAGATCGATGAAATCTTGTC-GCGAGCTCGGAA--T 249
Query 192 CGTTGGAAGATCTC-GCTCAATAAGCGTTACGTCATTGTCT-TCGTCTCTCTAA--TTAT 247
|||||||| ||||| | | || |||||||||||| ||| || ||||||||||| ||||
Sbjct 250 CGTTGGAAAATCTCAG-TTAACAAGCGTTACGTCGTTG-CTGCCGTCTCTCTAACTTTAT 307
Query 248 CTCAATCGGTCTTCTCTTCTTACTCACTGATCCTCGTGAACTATTTTCTGCGAATTTCTC 307
|| |||| ||||| |||||| | |||||| ||||| || | | | | |||||
Sbjct 308 -TC-GTCGGACTTCTGTTCTTATTTACTGATACTCGT--AC-A---T-T-C----TTCTC 353
Query 308 GAGTTTTAAGCTGGATCCATTGTCGAA-TCGTGTCAAGGAATCTGAGCTTCGTGCTTTGT 366
||| |||||||| |||||| |||| || |||||||||||||||||||| | ||| ||
Sbjct 354 GAGCTTTAAGCTTGATCCAATGTC-AAGCCGTGTCAAGGAATCTGAGCTCCAAGCTCTGA 412
Query 367 ATCTTCTGAGACAACAACAGCTTGCGCTTCTCTCTCT-TTGGAACGGTACGTTGGTGAAT 425
||||||| || || |||||||| ||||| ||||||| || |||| |||| |||
Sbjct 413 ATCTTCTTAGGCAGCAACAGCTAGCGCTAGTCTCTCTGTT-GAACCGTAC------GAA- 464
Query 426 CCTTCTCTTAA-TCAATCGGAGAATG-ATTTGAGATCGTCTGT-GTTGTTTGAGGATGTG 482
|| || || || || ||||| | || || || ||||| | | | || |||||
Sbjct 465 --TT-TC--AATTC-TTC---GAATGCAATT-AGTTCTTCTGTAG-TAATAGACAATGTG 513
Query 483 AAATCTGCTGTATC-GAAGCAGATTTCATTGAATAAGGAGATCCAA-AATGTGCTTCTAT 540
||| ||||| || | ||||||||||||| |||||||||| ||| || || |||||||| |
Sbjct 514 AAAGCTGCTCTA-CTGAAGCAGATTTCAGTGAATAAGGAAATCGAAGAA-GTGCTTCTTT 571
Query 541 CACCACACAGGAGTAGCAATTACTC---CGGTGGC-AC-GG--AAG-TTGATTCGGTGAA 592
|||||||||||| | | |||||||| | | || | || || | | ||| ||
Sbjct 572 CACCACACAGGACTGGGAATTACTCTATCACT-GCTTCTGGTTCAGATAGTTTCACTG-- 628
Query 593 TTTCTCAT-A--C-GATAGATGTAGAAAAGTGGATCAGAAGTTGTCAGATCGGAAAACTG 648
|||| || | | |||| ||||||||| || ||||||||||||| || |||||||| |
Sbjct 629 GTTCTTATAACGCTGATATATGTAGAAAGGTAGATCAGAAGTTGTTGGACCGGAAAAC-G 687
Query 649 -TAGAGTGGAAGCCGAGATCGGATAAGTTTCTATTCGCTATATGTCTCTCAGGTCAAATG 707
| || |||||||||||| | |||||||| ||||| ||||| ||||||||||||||||||
Sbjct 688 ATCGAATGGAAGCCGAGACCAGATAAGTTCCTATTTGCTATCTGTCTCTCAGGTCAAATG 747
Query 708 AGTAACCATTTGATTTGCTTAGAGAAACATATGTTCTTTGCTGCATTGTTGGATCGAGTT 767
|||||||| |||||||| |||||||||||||||||||||||||| | |||||||||||
Sbjct 748 AGTAACCACTTGATTTGTTTAGAGAAACATATGTTCTTTGCTGCGCTACTGGATCGAGTT 807
Query 768 -TTGGTGATACCTAGCTCAAAGTTTGATTACCAGTATGATAGAGTGATAGACATAGAGCG 826
|| ||||| || ||||| |||||||||||||||||||||| |||||| || ||||||||
Sbjct 808 CTT-GTGATTCCAAGCTCTAAGTTTGATTACCAGTATGATAAAGTGATTGATATAGAGCG 866
Query 827 GATTAATACTTGCTTGGGACGAAATGTTGTTGTTTCTTTTGATCAATTTAAGGAAAAGGC 886
|||||| || ||||||||| ||| |||||| ||||||||||||| || ||||| | |
Sbjct 867 GATTAACACGTGCTTGGGAAGAACTGTTGTCATTTCTTTTGATCAGTTCAAGGAGATTGA 926
Query 887 GAAAAAGAATC-ATTTTCGTATTGACCGGTTCATATGTTACTTCTCGTCACCACAGCTTT 945
|| ||||| | || || |||||| | ||||| |||||| ||||||| ||||||| ||
Sbjct 927 TAAGAAGAA-CAATGCTCACATTGACAGATTCATCTGTTACGTCTCGTCGCCACAGCCTT 985
Query 946 GTTATGTGGATGAGGAGCATATTAAGAAGCTGAAAGGTTTGGGGATTTCCATTGATGGGA 1005
||||||| |||||||| ||||| |||||||| || || |||||| ||||||||| |||||
Sbjct 986 GTTATGTTGATGAGGATCATATCAAGAAGCTCAAGGGATTGGGGGTTTCCATTGGTGGGA 1045
Query 1006 AGCTTGAGGCTCCTTGGAGTGAAGACATAAAGAAGCCGAGC-AAGAGAACTG-TGCAAGA 1063
||||||||||||||||||||||||| ||||||||||| | | ||| | ||| | |||||
Sbjct 1046 AGCTTGAGGCTCCTTGGAGTGAAGATATAAAGAAGCCAA-CTAAGCGGACTTCT-CAAGA 1103
Query 1064 CGTACAG-ACAAAGTTTAAGTCTGATGATGACGTGATCGCCATCGGGGATGTTTTCTATG 1122
||| | | |||||||||||| ||||||| ||||||||||| |||||||| |||||||
Sbjct 1104 GGTAGTGGA-AAAGTTTAAGTCCGATGATGGTGTGATCGCCATAGGGGATGTCTTCTATG 1162
Query 1123 CTGATATGGAGCAAGATTGGGCGATGCAGCCTGGTGGACCTATTAACCACAAGTGCAAGA 1182
|||||||||||||||||| || |||||||||||||||||| || ||||| || || || |
Sbjct 1163 CTGATATGGAGCAAGATTTGGTGATGCAGCCTGGTGGACCCATCAACCATAAATGTAAAA 1222
Query 1183 CCCTGATCGAACCCAGTAAGCTGATTTTGTTGACCGCACAGA-GATTCATCCAGACCTTC 1241
| |||||||||||||||| ||| |||||| |||| ||||| | ||||||||||||| |||
Sbjct 1223 CACTGATCGAACCCAGTAGGCTCATTTTGGTGACGGCACA-ACGATTCATCCAGACATTC 1281
Query 1242 TTGGGAAAGAATTTCATCGCACTTCATTTTCGCAGACATGGGTTCCTCAAATTCTGCAAT 1301
|| ||||||||||||||| | |||||| | || || ||||||||||| || |||||||||
Sbjct 1282 TTAGGAAAGAATTTCATCTCGCTTCATCTCCGTAGGCATGGGTTCCTTAAGTTCTGCAAT 1341
Query 1302 GCAAAATCTCCAAGTTGCTTCTATCCAATTCCACAAGCTGCAGAGTGCATC-GCTCGGAT 1360
|||||||| |||||||| || ||||| || |||||||||||||| |||||| | ||||||
Sbjct 1342 GCAAAATCGCCAAGTTGTTTTTATCCCATACCACAAGCTGCAGACTGCATCAG-TCGGAT 1400
Query 1361 AGTGGAAAGATCCAATGGCGC-AGTCATCTATCTTTCAACAGATGCTGCAGAAAGTGAAA 1419
|||||||| |||||| | | ||||||||| ||||||||||||||||||||||| ||||
Sbjct 1401 GGTGGAAAGGGCCAATG-CTCCAGTCATCTACCTTTCAACAGATGCTGCAGAAAGCGAAA 1459
Query 1420 CAAGTCTGCTTCAGTCACTTGTTGTGGTAGATGGAAAAATTGTGCCTCTTGTCAAACGTC 1479
| |||| ||||||||||| || || || ||||||||| | || || |||||||||||||
Sbjct 1460 CCGGTCTTCTTCAGTCACTAGTAGTCGTTGATGGAAAAGTCGTTCCCCTTGTCAAACGTC 1519
Query 1480 CACCTCGTAATTCAGCTGAAAAGTGGGACGCATTGTTATATCGACATGGTATAGAGGATG 1539
|||||| || || || |||||||||||| | ||||| ||| ||||||||||||| ||||
Sbjct 1520 CACCTCAAAACTCTGCAGAAAAGTGGGACTCGTTGTTGTATAGACATGGTATAGAAGATG 1579
Query 1540 ACTCTCAGGTGGATGCAATGCTTG-ATAAAACAATATGCGCCATGTCCAGCGTCTTCATT 1598
||||||||||| |||| ||| ||| |||| || ||||| || |||||||| || |||||
Sbjct 1580 ACTCTCAGGTGTATGCTATG-TTGGATAAGACTATATGTGCAATGTCCAGTGTATTCATC 1638
Query 1599 GGAGCCTCGGGATCAACTTTCACAGAGGATATCTTGAGACTAAGGAAAGATTGGGGAACA 1658
||||| ||||| || ||||| ||||||||||||||| | ||||| ||||| ||||||||
Sbjct 1639 GGAGCATCGGGTTCTACTTTTACAGAGGATATCTTGCGGCTAAGAAAAGACTGGGGAACT 1698
Query 1659 TCCTCTACATGCGATGAGTACCTCTGTCGAGGAGAAGAGCCAAACTTCATAGCAGAAGAT 1718
|| |||| ||||||||||| ||||||||||| ||||| |||||||||||||| ||| ||
Sbjct 1699 TCATCTATGTGCGATGAGTATCTCTGTCGAGGCGAAGAACCAAACTTCATAGCTGAAAAT 1758
Query 1719 GAATAA 1724
||||||
Sbjct 1759 GAATAA 1764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86294736855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5