BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949594
Length=677
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50470.1 | Symbols: NF-YC7 | nuclear factor Y, subunit C7 | ... 577 5e-164
> AT5G50470.1 | Symbols: NF-YC7 | nuclear factor Y, subunit C7
| chr5:20555120-20555758 REVERSE LENGTH=639
Length=639
Score = 577 bits (312), Expect = 5e-164
Identities = 548/656 (84%), Gaps = 40/656 (6%)
Strand=Plus/Plus
Query 21 ATGGAAGAAAACAACGGCAACAACCACCACCA-GTGGCCGCAACAATCGTCTTCGCAACA 79
|||||||| ||||||||||||||| ||||| | | |||||||| ||||||||| ||||
Sbjct 1 ATGGAAGAGAACAACGGCAACAACAACCACTACCT-GCCGCAACCATCGTCTTCCCAACT 59
Query 80 GCTGCCGCCACCATCCTATTCGCAACCACTGCCGTCGCCGTTGTATTCACTGCCGCCGCC 139
|| ||||||||||| |||| ||| || |||||| ||||| ||||||||||||| |||
Sbjct 60 GCCGCCGCCACCATTGTATTATCAATCAATGCCGTTGCCGTCATATTCACTGCCGCTGCC 119
Query 140 GTACTCACTGCAGACACAGACACAGAATTATTGGATTGAGCGGACGGGAAACGCCTCTGA 199
|||||||| | | |||| | |||||||||||||| || || ||||||||| ||||
Sbjct 120 GTACTCAC--C-G---CAGATGCGGAATTATTGGATTGCGCAGATGGGAAACGCAACTGA 173
Query 200 TGTTAAACATAATGAGTTTCCACTAGCGAGGATCAAA-AAGATTATGAAGTCCGACGC-G 257
|||||| ||| ||| |||||||||| | ||||| ||| || || ||||||||| || | |
Sbjct 174 TGTTAAGCATCATGCGTTTCCACTAACCAGGAT-AAAGAAAATCATGAAGTCCAACCCGG 232
Query 258 AACGTGCAA-AAGGTCACTGCGGAAGCTCCCATCCTAATATCGAAGGCCTGTGAGATGCT 316
|| ||| || | ||||||||| || ||||| |||| |||||||||||||||||||||||
Sbjct 233 AA-GTG-AACATGGTCACTGCAGAGGCTCCGGTCCTTATATCGAAGGCCTGTGAGATGCT 290
Query 317 CATTCTTGATCTCACAATGCAATCTTGGCTTCATACCGTGGAGGGCAGACGC-------- 368
|||||||||||||||||||| ||| ||||||||||||||||||||| | |||
Sbjct 291 CATTCTTGATCTCACAATGCGATCGTGGCTTCATACCGTGGAGGGCGGTCGCCAAACTCT 350
Query 369 ---GA-A----A--CGCTCAAGAGATCCGATATCTCCGCCGCAGTGACTCGT-GATTTGA 417
|| | | |||||| |||||||||||||||||||||| ||||||| | ||| |
Sbjct 351 CAAGAGATCCGATACGCTCACGAGATCCGATATCTCCGCCGCAACGACTCGTAG-TTTCA 409
Query 418 AATTTACCTTCCTTGGCGACGTTGTCCCAAGAGACCCGTCCGTCGTTACTGCTTATCCCG 477
||||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||||
Sbjct 410 AATTTACCTTCCTTGGCGACGTTGTCCCAAGAGACCCTTCCGTCGTTACCGATGATCCCG 469
Query 478 TGCCCAAGCCGCATCCTGAGGGTGAAGTACTTCCGCCGGGAATGGTGATAGGACATCCGG 537
||| | | |||| || |||||||||||||| ||||||| |||||||||| ||||||
Sbjct 470 TGCT-A--C---ATCCGGACGGTGAAGTACTTCCTCCGGGAACGGTGATAGGATATCCGG 523
Query 538 TGTTTGGTTGTAATTGTACGTACGCGCCACCGCCGCAGATGCAGGAGTGGCCGGCGGTGC 597
|||||| ||||||| || ||||||| ||||||| |||||||||||||||||||||||||
Sbjct 524 TGTTTGATTGTAATGGTGTGTACGCGTCACCGCCACAGATGCAGGAGTGGCCGGCGGTGC 583
Query 598 CTGATGACGGAGAGGAGGCAGCTGAGGAAATTGGAGGAAGCAGCGGCGGGAATTGA 653
||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 584 CTGGTGACGGAGAGGAGGCAGCTGGGGAAATTGGAGGAAGCAGCGGCGGTAATTGA 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32752663844
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5