BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949596
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50115.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular... 401 6e-111
> AT5G50115.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular
chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609);
BEST Arabidopsis thaliana protein match is: Molecular
chaperone Hsp40/DnaJ family protein (TAIR:AT5G50510.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:20379489-20381036 FORWARD LENGTH=1458
Length=1458
Score = 401 bits (217), Expect = 6e-111
Identities = 308/351 (88%), Gaps = 10/351 (3%)
Strand=Plus/Plus
Query 635 TGGGCTCTTTATGAAAATTGGTCACCATCTTGGGATTTTTCAACTTCAGTAGAAGAAATG 694
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1069 TGGGCTCTTTATGCAAATTGGTCACCATCTTGGGATATTTCAACTTCAGTAGAAGAAATG 1128
Query 695 AACAAGTATGAAATGGTAGAAGTCCTTCAAGATTTCGACGAAGAGA-ACGGTGTGA-AGG 752
||||||||||| ||||||||||| |||||||||||||| ||||| | | ||||||| ||
Sbjct 1129 AACAAGTATGATATGGTAGAAGTGCTTCAAGATTTCGATGAAGAAAGA-GGTGTGACAG- 1186
Query 753 TTGTGCCTCTTGTTAAACTCTCGGGATTTAAAACTTTATTCCGTCGCCATCC-AAGTCAG 811
|||| || || |||||| || | ||||| |||||| | || ||||||| | | || || |
Sbjct 1187 TTGTACCGCTAGTTAAAGTCCCAGGATTCAAAACTGTGTTTCGTCGCCGTTCGAA-TCCG 1245
Query 812 AGGACATACCCAAGGAAAGAACTATTCAGGTTCTCGCATCAAGTTGCTTATCAGTTGCTT 871
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 1246 AGGACATACCCAAGGAAAGAACTGTTCAGGTTCTCGCATCAAGTTGCTTATCAATTACTT 1305
Query 872 ACAGGTGAAGAAGGTGAGAATGCTCCTGACGG-TTGCTTGGAGCTTGATCCAGCAGCTTT 930
||| || || || || ||||||||||| || | |||||||||||||||||||||| ||||
Sbjct 1306 ACAAGTAAAAAATGTAAGAATGCTCCT-ACAGATTGCTTGGAGCTTGATCCAGCATCTTT 1364
Query 931 GACACCGGAGCTTCTCAAGGTTCTCACTGAGGAGGAGATGAGAGAAGTGGA 981
||||| ||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 1365 GACACATGAGCTTCTCAAAGTTCTCACTGAGGAGGA--TGAGAGAATTGGA 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5