BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949596 Length=1056 Score E Sequences producing significant alignments: (Bits) Value AT5G50115.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular... 401 6e-111 > AT5G50115.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Molecular chaperone Hsp40/DnaJ family protein (TAIR:AT5G50510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:20379489-20381036 FORWARD LENGTH=1458 Length=1458 Score = 401 bits (217), Expect = 6e-111 Identities = 308/351 (88%), Gaps = 10/351 (3%) Strand=Plus/Plus Query 635 TGGGCTCTTTATGAAAATTGGTCACCATCTTGGGATTTTTCAACTTCAGTAGAAGAAATG 694 ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1069 TGGGCTCTTTATGCAAATTGGTCACCATCTTGGGATATTTCAACTTCAGTAGAAGAAATG 1128 Query 695 AACAAGTATGAAATGGTAGAAGTCCTTCAAGATTTCGACGAAGAGA-ACGGTGTGA-AGG 752 ||||||||||| ||||||||||| |||||||||||||| ||||| | | ||||||| || Sbjct 1129 AACAAGTATGATATGGTAGAAGTGCTTCAAGATTTCGATGAAGAAAGA-GGTGTGACAG- 1186 Query 753 TTGTGCCTCTTGTTAAACTCTCGGGATTTAAAACTTTATTCCGTCGCCATCC-AAGTCAG 811 |||| || || |||||| || | ||||| |||||| | || ||||||| | | || || | Sbjct 1187 TTGTACCGCTAGTTAAAGTCCCAGGATTCAAAACTGTGTTTCGTCGCCGTTCGAA-TCCG 1245 Query 812 AGGACATACCCAAGGAAAGAACTATTCAGGTTCTCGCATCAAGTTGCTTATCAGTTGCTT 871 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| Sbjct 1246 AGGACATACCCAAGGAAAGAACTGTTCAGGTTCTCGCATCAAGTTGCTTATCAATTACTT 1305 Query 872 ACAGGTGAAGAAGGTGAGAATGCTCCTGACGG-TTGCTTGGAGCTTGATCCAGCAGCTTT 930 ||| || || || || ||||||||||| || | |||||||||||||||||||||| |||| Sbjct 1306 ACAAGTAAAAAATGTAAGAATGCTCCT-ACAGATTGCTTGGAGCTTGATCCAGCATCTTT 1364 Query 931 GACACCGGAGCTTCTCAAGGTTCTCACTGAGGAGGAGATGAGAGAAGTGGA 981 ||||| ||||||||||| ||||||||||||||||| |||||||| |||| Sbjct 1365 GACACATGAGCTTCTCAAAGTTCTCACTGAGGAGGA--TGAGAGAATTGGA 1413 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51791405557 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5