BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949597

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G27910.1 | Symbols: NF-YC8 | nuclear factor Y, subunit C8 | ...   425    2e-118


> AT5G27910.1 | Symbols: NF-YC8 | nuclear factor Y, subunit C8 
| chr5:9940736-9941299 REVERSE LENGTH=564
Length=564

 Score =  425 bits (230),  Expect = 2e-118
 Identities = 381/453 (84%), Gaps = 14/453 (3%)
 Strand=Plus/Plus

Query  23   ATGGAGAACAACAACCACCAGCAGCCA-C-CCCAACCCCAAGACAACGAGCAGCTAAAGA  80
            |||||||||||||| |  || || ||| |  || |||  |||  |||||||| || ||||
Sbjct  1    ATGGAGAACAACAA-CGGCAACAACCAGCTGCC-ACCGAAAGGTAACGAGCAACTGAAGA  58

Query  81   GTTTCTGGTCAAAGGAGATGGAAGGTGACTTGGATTT-AAAGAATCACGAGTTTCCCT-T  138
            ||||||||||||| |||||||||||| |||| ||||| ||| ||||||||  || ||| |
Sbjct  59   GTTTCTGGTCAAAAGAGATGGAAGGTAACTTAGATTTCAAA-AATCACGACCTT-CCTAT  116

Query  139  ATCTCGTATCAAGAGGATTATGAAGTTTGATCCTGATGTGAATATGATCGCTGCG-GAGG  197
            | |||||||||||| ||||||||||| |||||| ||||||| |||||| |||  | ||||
Sbjct  117  AACTCGTATCAAGAAGATTATGAAGTATGATCCGGATGTGACTATGATAGCT-AGTGAGG  175

Query  198  CACCAATCCTGTTTTCCAAAGCCTGCGAGATGTTTATCATGGATGTCACGATGCGTTCGT  257
            | ||||||||  | || ||||| || |||||||||||||||||| |||||||||||||||
Sbjct  176  CTCCAATCCTCCTCTCGAAAGCATGTGAGATGTTTATCATGGATCTCACGATGCGTTCGT  235

Query  258  GGCTCCATGCTCAGGAGAGAAAACGACTCACGATAAAGAAATCTGATGTCGCTGCCGCAG  317
            |||||||||||||||| || |||||| ||||| || |||||||| |||||| ||||||||
Sbjct  236  GGCTCCATGCTCAGGAAAGCAAACGAGTCACGCTACAGAAATCTAATGTCGATGCCGCAG  295

Query  318  TGGATCGAACCCTCATCTTTGATTTCTTGCTTGATGTTGTCAATGAGG-AAGAGGGAGAG  376
            ||| || |||  | |||||||||||||||||||||| || || ||||| || || |||||
Sbjct  296  TGGCTCAAACTGTTATCTTTGATTTCTTGCTTGATGATGACATTGAGGTAA-AGAGAGAG  354

Query  377  TCCGTTGCTACCGCTGCTGATCCCGTGGCCATGCCACATCTTGGCGATGGAGAACTGCC-  435
            || |||||  ||||||||||||| ||||||||||||| | ||| ||||||||| ||||| 
Sbjct  355  TCTGTTGCCGCCGCTGCTGATCCTGTGGCCATGCCACCTATTGACGATGGAGAGCTGCCT  414

Query  436  CCAGGGAATGGTGATAGGAACTCCGGTTTGTTG  468
            ||||| |||||| || |||||||| ||||||||
Sbjct  415  CCAGG-AATGGTAATTGGAACTCCTGTTTGTTG  446



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27226907674


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5