BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949598

Length=464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G53450.1 | Symbols:  | Putative lysine decarboxylase family ...   215    3e-55
  AT2G37210.2 | Symbols:  | lysine decarboxylase family protein |...   183    9e-46


> AT3G53450.1 | Symbols:  | Putative lysine decarboxylase family 
protein | chr3:19812977-19815430 REVERSE LENGTH=648
Length=648

 Score =  215 bits (116),  Expect = 3e-55
 Identities = 123/126 (98%), Gaps = 1/126 (1%)
 Strand=Plus/Plus

Query  140  GGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGTTTCACAAG  199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  131  GGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGTTTCGCAAG  190

Query  200  CTGTTCATGATAGTGGTCGCCATGTTATTGGAGTTATTCCCAAGACACTCATGCCTAGAG  259
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  191  CTGTTCATGATGGTGGTCGCCATGTTATTGGAGTTATTCCCAAGACACTCATGCCTAGAG  250

Query  260  AGGTTG  265
            || |||
Sbjct  251  AG-TTG  255


> AT2G37210.2 | Symbols:  | lysine decarboxylase family protein 
| chr2:15623991-15626938 REVERSE LENGTH=1086
Length=1086

 Score =  183 bits (99),  Expect = 9e-46
 Identities = 120/130 (92%), Gaps = 1/130 (1%)
 Strand=Plus/Plus

Query  136  TCACGGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGTTTCA  195
            ||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  231  TCAAGGAATATTGATCTAGTCTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCA  290

Query  196  CAAGCTGTTCATGATAGTGGTCGCCATGTTATTGGAGTTATTCCCAAGACACTCATGCCT  255
            ||||||||||||||| ||||||| |||||||||||| | ||||||||||| |||||||||
Sbjct  291  CAAGCTGTTCATGATGGTGGTCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGCCT  350

Query  256  AGAGAGGTTG  265
            |||||| |||
Sbjct  351  AGAGAG-TTG  359



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22052790533


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5