BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949600
Length=404
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50115.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular... 215 3e-55
> AT5G50115.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular
chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609);
BEST Arabidopsis thaliana protein match is: Molecular
chaperone Hsp40/DnaJ family protein (TAIR:AT5G50510.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:20379489-20381036 FORWARD LENGTH=1458
Length=1458
Score = 215 bits (116), Expect = 3e-55
Identities = 140/152 (92%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 227 TTTGGGCTCTTTATGAAAACTGGTCACCATCTTGGGATATTTCAACTTCAGTAGAAGAAA 286
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TTTGGGCTCTTTATGCAAATTGGTCACCATCTTGGGATATTTCAACTTCAGTAGAAGAAA 1126
Query 287 TGAACAAGTATGAAATGGTAGAAGTCCTTCAAGATTTCGACGAAGAGAGAGGTGTGACAG 346
||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 1127 TGAACAAGTATGATATGGTAGAAGTGCTTCAAGATTTCGATGAAGAAAGAGGTGTGACAG 1186
Query 347 TTGTGCCACTTGTTAAACTCTCAGGATTTAAA 378
|||| || || |||||| || ||||||| |||
Sbjct 1187 TTGTACCGCTAGTTAAAGTCCCAGGATTCAAA 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19101744620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5