BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949601
Length=604
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27910.1 | Symbols: NF-YC8 | nuclear factor Y, subunit C8 | ... 538 2e-152
AT5G50490.1 | Symbols: NF-YC5 | nuclear factor Y, subunit C5 | ... 459 2e-128
> AT5G27910.1 | Symbols: NF-YC8 | nuclear factor Y, subunit C8
| chr5:9940736-9941299 REVERSE LENGTH=564
Length=564
Score = 538 bits (291), Expect = 2e-152
Identities = 479/570 (84%), Gaps = 12/570 (2%)
Strand=Plus/Plus
Query 21 ATGGAGAACATCACCGGCAACCACCAGCAGCCACAAAAAGATAACGAGCAACTAAAGAGT 80
|||||||||| || ||||||| |||||| ||||| |||| |||||||||||| ||||||
Sbjct 1 ATGGAGAACAACAACGGCAACAACCAGCTGCCACCGAAAGGTAACGAGCAACTGAAGAGT 60
Query 81 TTCTGGTCAAAGGAGATGGAAGGTGACTTGA-ATTTCAAGAATCACGAGTTTCCCATAAC 139
||||||||||| |||||||||||| |||| | ||||||| |||||||| |||| |||||
Sbjct 61 TTCTGGTCAAAAGAGATGGAAGGTAACTT-AGATTTCAAAAATCACGACCTTCCTATAAC 119
Query 140 TCGTATCAAGAGGATTATGAAGTTTGATCCTGATGTGACTATGGTTGCTGGTGAGGCACC 199
||||||||||| ||||||||||| |||||| |||||||||||| | ||| ||||||| ||
Sbjct 120 TCGTATCAAGAAGATTATGAAGTATGATCCGGATGTGACTATGATAGCTAGTGAGGCTCC 179
Query 200 AATCCTATTCTCGAAAGCCTGCGAGATGTTCATCATGGATGTCACGATGCGTTCGTGGCT 259
|||||| |||||||||| || |||||||| ||||||||| |||||||||||||||||||
Sbjct 180 AATCCTCCTCTCGAAAGCATGTGAGATGTTTATCATGGATCTCACGATGCGTTCGTGGCT 239
Query 260 CCATGCTCAGGAGAGCAACCGACTCACGATAAAGAGATCTGATGTCGCTGCCGCAGTGGA 319
|||||||||||| ||||| ||| ||||| || ||| |||| |||||| |||||||||||
Sbjct 240 CCATGCTCAGGAAAGCAAACGAGTCACGCTACAGAAATCTAATGTCGATGCCGCAGTGGC 299
Query 320 TCGAACCCTCATCTTTGATTTCTTGCTTGATGTTGTCGAT-GAGG-ACGAGGGAGAGTCC 377
|| ||| | |||||||||||||||||||||| || | || |||| | || |||||||
Sbjct 300 TCAAACTGTTATCTTTGATTTCTTGCTTGATGATGAC-ATTGAGGTAA-AGAGAGAGTCT 357
Query 378 GTTGTCGCCGCTGCTGATC-TCGTGGCCGTGCCACATCTTGACAATGGAGAACTGCCGCC 436
|||| |||||||||||||| | |||||| |||||| | ||||| ||||||| ||||| ||
Sbjct 358 GTTGCCGCCGCTGCTGATCCT-GTGGCCATGCCACCTATTGACGATGGAGAGCTGCCTCC 416
Query 437 GGGAATGGTTATAGGTACTCCGGTTTGTAGCGGTCTTGGAATATACGCG-CCACAGCCGC 495
|||||||| || || ||||| |||||| | |||||||||| || | ||||| || |
Sbjct 417 AGGAATGGTAATTGGAACTCCTGTTTGTTGTAGTCTTGGAATCCAC-CAACCACAACCAC 475
Query 496 AGATGCAGGCGTGGCCTGGAGCTTGGACCGCGGCGCCTGGTGAGGAGGAGGATGCG-GCT 554
| |||||||| |||||||||||||||||| ||| | ||||||||||||| || ||| | |
Sbjct 476 AAATGCAGGCATGGCCTGGAGCTTGGACCTCGGTGTCTGGTGAGGAGGAAGAAGCGCG-T 534
Query 555 GGGGGAAATGGAGAAGACGGCGGAAATTAA 584
||| ||| |||| |||| |||||| |||
Sbjct 535 GGGAAAAAAGGAGGTGACGACGGAAACTAA 564
> AT5G50490.1 | Symbols: NF-YC5 | nuclear factor Y, subunit C5
| chr5:20560434-20561187 REVERSE LENGTH=754
Length=754
Score = 459 bits (248), Expect = 2e-128
Identities = 436/523 (83%), Gaps = 28/523 (5%)
Strand=Plus/Plus
Query 3 CTTCAAACAAAAGATATCATGGAGAACATCACCGGCAACCACCAGCAGCCACAAAAAGAT 62
|||||||||||| | | |||||||||| || | ||||||||| ||||||| ||||||
Sbjct 1 CTTCAAACAAAA-AAAAAATGGAGAACAACAACAACAACCACCAACAGCCACCGAAAGAT 59
Query 63 AACGAGCAACTAAAGAGTTTCTGGTCAAAGGAGATGGAAGGTGACTTGAATTTCAAGAAT 122
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 60 AACGAGCAACTAAAGAGTTTCTGGTCAAAGGGGATGGAAGGTGACTTGAATGTCAAGAAT 119
Query 123 CACGAGTTTCCCATAACTCGTATCAAGAGGATTATGAAGTTTGATCCTGATGTGACTATG 182
|||||||| ||||| |||||||||||||||| |||||||||||||| ||||||| ||||
Sbjct 120 CACGAGTTCCCCATCTCTCGTATCAAGAGGATAATGAAGTTTGATCCGGATGTGAGTATG 179
Query 183 GTTGCTGGTGAGGCACCAA-TCCTATTCTCGAAAGCCTGCGAGATGTTCATCATGGATGT 241
| |||| |||||| |||| || | || || || || || || ||||| ||||||| |
Sbjct 180 ATCGCTGCTGAGGCTCCAAATC-TCTTATCTAAGGCTTGTGAAATGTTTGTCATGGACCT 238
Query 242 CACGATGCGTTCGTGGCTCCATGCTCAGGAGAGCAACCGACTCACGATAAAGAGATCTGA 301
|||||||||||| |||||||||||||| ||||||||||||||||||||| || ||||||
Sbjct 239 CACGATGCGTTCATGGCTCCATGCTCAAGAGAGCAACCGACTCACGATACGGAAATCTGA 298
Query 302 TGTCGCTGCCGCAGTGGATCGAACCCTCATCTTTGATTTCTTGCTTGATGTTGTCGATGA 361
||| | ||||| |||| || |||| |||||||||||||||||| ||||| |||| | |
Sbjct 299 TGTTGATGCCGTAGTGTCTCAAACCGTCATCTTTGATTTCTTGCGTGATGATGTCCCTAA 358
Query 362 GGACGAGGGAGAGTCCGTTGTCGCCGCTGCTGATC-T-----CG-TG--GC----C--GT 406
||||||||||||| ||||||||||||||||||||| | || || || | ||
Sbjct 359 GGACGAGGGAGAGCCCGTTGTCGCCGCTGCTGATCCTGTGGACGATGTTGCTGATCATGT 418
Query 407 G-C----C-ACATCTTGACAATGGAGAACTGCCGCCGGGAATGGTTATAGGTACTCCGGT 460
| | | | ||||| |||||| ||||||||||||||||| ||| ||||| ||||||||
Sbjct 419 GGCTGTGCCAGATCTTAACAATGAAGAACTGCCGCCGGGAACGGTGATAGGAACTCCGGT 478
Query 461 TTGT-AGCGGTCTT-GGAATATACGCGCCACAGCCGCAGATGC 501
|||| | |||| || |||||| |||||||||| ||||||||||
Sbjct 479 TTGTTA-CGGT-TTAGGAATACACGCGCCACACCCGCAGATGC 519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29085571113
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5