BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949602

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G23290.1 | Symbols: PFD5 | prefoldin 5 | chr5:7846081-784764...   259    1e-68
  AT4G35970.1 | Symbols: APX5 | ascorbate peroxidase 5 | chr4:170...   176    1e-43


> AT5G23290.1 | Symbols: PFD5 | prefoldin 5 | chr5:7846081-7847643 
FORWARD LENGTH=734
Length=734

 Score =  259 bits (140),  Expect = 1e-68
 Identities = 169/183 (92%), Gaps = 1/183 (1%)
 Strand=Plus/Plus

Query  11   gagagagaA-AATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATTGGAATCGATC  69
            ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  53   GAGAGAGAAGAATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATC  112

Query  70   AGCTGAAGGCGTTAAAGGAGCAAGCGGATCTGGAAGTGAATCTCCTTCAAAATAGTCTTA  129
            |||| || || || ||||||||||| ||||||||||||||||| |||||| ||||||| |
Sbjct  113  AGCTAAAAGCTTTGAAGGAGCAAGCAGATCTGGAAGTGAATCTTCTTCAAGATAGTCTCA  172

Query  130  ACAACATCCGTACAGCCACCGTCCGTCTTGATGCCGCCGCCGCAGCTCTCAACGATCTAT  189
            |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct  173  ACAACATCCGTACAGCTACCGTTCGTCTCGATGCCGCCGCCGCAGCTCTCAACGATCTCT  232

Query  190  CTC  192
            |||
Sbjct  233  CTC  235


> AT4G35970.1 | Symbols: APX5 | ascorbate peroxidase 5 | chr4:17028606-17030293 
FORWARD LENGTH=973
Length=973

 Score =  176 bits (95),  Expect = 1e-43
 Identities = 102/105 (97%), Gaps = 2/105 (2%)
 Strand=Plus/Plus

Query  201  GGAACCTATGATGCCAAGAAGAAAACCGGAGGTCCCAATGGATCTATCAAG-TTCAAGGA  259
            ||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct  169  GGAACCTATGATGCCAAGAAGAAAACCGGAGGTGCCAATGGATCTATC-AGATTCAAGGA  227

Query  260  AGAGCTAAACCGTCCACACAACAAAGGTTTGGAGAAGGCAGTCGC  304
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  228  AGAGCTAAACCGTCCACACAACAAAGGTTTGGAGAAGGCAGTCGC  272



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15784073186


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5