BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949602 Length=338 Score E Sequences producing significant alignments: (Bits) Value AT5G23290.1 | Symbols: PFD5 | prefoldin 5 | chr5:7846081-784764... 259 1e-68 AT4G35970.1 | Symbols: APX5 | ascorbate peroxidase 5 | chr4:170... 176 1e-43 > AT5G23290.1 | Symbols: PFD5 | prefoldin 5 | chr5:7846081-7847643 FORWARD LENGTH=734 Length=734 Score = 259 bits (140), Expect = 1e-68 Identities = 169/183 (92%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 11 gagagagaA-AATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATTGGAATCGATC 69 ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 53 GAGAGAGAAGAATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATC 112 Query 70 AGCTGAAGGCGTTAAAGGAGCAAGCGGATCTGGAAGTGAATCTCCTTCAAAATAGTCTTA 129 |||| || || || ||||||||||| ||||||||||||||||| |||||| ||||||| | Sbjct 113 AGCTAAAAGCTTTGAAGGAGCAAGCAGATCTGGAAGTGAATCTTCTTCAAGATAGTCTCA 172 Query 130 ACAACATCCGTACAGCCACCGTCCGTCTTGATGCCGCCGCCGCAGCTCTCAACGATCTAT 189 |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| | Sbjct 173 ACAACATCCGTACAGCTACCGTTCGTCTCGATGCCGCCGCCGCAGCTCTCAACGATCTCT 232 Query 190 CTC 192 ||| Sbjct 233 CTC 235 > AT4G35970.1 | Symbols: APX5 | ascorbate peroxidase 5 | chr4:17028606-17030293 FORWARD LENGTH=973 Length=973 Score = 176 bits (95), Expect = 1e-43 Identities = 102/105 (97%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 201 GGAACCTATGATGCCAAGAAGAAAACCGGAGGTCCCAATGGATCTATCAAG-TTCAAGGA 259 ||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 169 GGAACCTATGATGCCAAGAAGAAAACCGGAGGTGCCAATGGATCTATC-AGATTCAAGGA 227 Query 260 AGAGCTAAACCGTCCACACAACAAAGGTTTGGAGAAGGCAGTCGC 304 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 228 AGAGCTAAACCGTCCACACAACAAAGGTTTGGAGAAGGCAGTCGC 272 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15784073186 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5