BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949608
Length=1117
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50670.1 | Symbols: SPL13B, SPL13 | Squamosa promoter-bindin... 1775 0.0
AT5G50570.1 | Symbols: SPL13A, SPL13 | Squamosa promoter-bindin... 1775 0.0
AT3G57920.1 | Symbols: SPL15 | squamosa promoter binding protei... 54.7 2e-06
> AT5G50670.1 | Symbols: SPL13B, SPL13 | Squamosa promoter-binding
protein-like (SBP domain) transcription factor family protein
| chr5:20615704-20617901 REVERSE LENGTH=1497
Length=1497
Score = 1775 bits (961), Expect = 0.0
Identities = 1068/1119 (95%), Gaps = 9/1119 (1%)
Strand=Plus/Plus
Query 4 AAAAA-CAAAATCTTTGAATGGACTGGAATTTCAAAGTTAGCTCTGGTTATTTATCTGGA 62
||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 207 AAAAAGCACAATCTTTGAATGGACTGGAATTTCAAACTTAGCTCTGGTTATTTATCTGGA 266
Query 63 TTCGATCAAGAACCGGATTTATCACCAATGGATGGTTCGATCTCGTTTGGTGGGTCTTCA 122
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 267 TTCGATCAAGAACCAGATTTATCACCAATGGATGGTTCGATCTCGTTTGGTGGGTCGTCA 326
Query 123 CAGTCAAAAGGGGAATTTTCATTTGATCTGAAACTTGGAAGAAACAATGGAAACTCTTCC 182
|||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 327 CAGTCAAAAGCGGATTTTTCATTTGATCTAAAACTTGGAAGAAACATTGGAAACTCTTCC 386
Query 183 TCTGTTTTTGGTGATACAGAGCAAGTGATAAGTCTAAGTAAGTGGAAAGAGAGTTCTTTG 242
||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||
Sbjct 387 TCTGTTTTTGGTGATACAGAGCAAGTGATTAGTCTTAGTAAGTGGAAAGATAGTGCTTTA 446
Query 243 GCTAAACCAG-AGAGTTCGAGAAGTTCGAGTTCAAAGAGAACAAGAGGGAACGGTGCTGG 301
|||||||||| || |||| ||||| |||||||||||||||||||||||||| |||| |||
Sbjct 447 GCTAAACCAGAAG-GTTCAAGAAGCTCGAGTTCAAAGAGAACAAGAGGGAATGGTGTTGG 505
Query 302 AACCAACCAGATGCCGATTTGT-TTAGTTGATGGATGTGATTCTGATTTTAGTAATTGTA 360
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 506 AACCAACCAGATGCCGATTTGTCTT-GTTGATGGATGTGATTCTGATTTTAGTAATTGTA 564
Query 361 GAGAGTATCATAAGAGACATAAGGTTTGTGATGTTCATTCAAAAACTCCTGTGGTTACTA 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 565 GAGAGTATCATAAGAGACATAAAGTTTGTGATGTTCATTCAAAAACTCCTGTGGTTACTA 624
Query 421 TTAATGGTCACAAGCAGAGGTTTTGTCAACAATGTAGCAGGTTTCATGCTTTGGAAGAGT 480
|||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 625 TTAATGGTCATAAACAGAGGTTTTGTCAACAATGCAGCAGGTTTCATGCTTTGGAGGAGT 684
Query 481 TTGATGAAGGGAAGAGAAGTTGTAGAAAACGTCTTGATGGACATAATCGAAGAAGACGGA 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 685 TTGATGAAGGGAAGAGAAGTTGTAGGAAACGTCTTGATGGACATAATCGAAGACGACGGA 744
Query 541 AGCCGCAGCCTGAACATATCGGTCGTCCTGCGAACTTCTTTACGGGTTTTCAAGGTAGCA 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 745 AGCCGCAGCCTGAACATATCGGTCGTCCTGCCAACTTCTTTACGGGTTTTCAAGGTAGCA 804
Query 601 AATTGCTAGAGTTTTCGGGTGGTTCACATGTGTTTCCAACTACATCTGTGTTGAACCCGA 660
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 AATTGCTAGAGTTTTCTGGTGGTTCACATGTGTTTCCAACTACATCTGTGTTGAACCCGA 864
Query 661 GCTGGGGAAATAGTCTTGTAAGCGTTGCTGTGGCCGCCAATGGTTCGAGTTACGGGCAGA 720
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 865 GCTGGGGAAATAGTCTTGTAAGCGTTGCTGTAGCCGCCAATGGTTCGAGTTATGGGCAGA 924
Query 721 ACCAGAGCTA---TGTTGGTTCTTCTCCTGCTAAGACAGGGATAATGTTTCCAATCTCTT 777
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 925 GCCAGAGCTATGTTGTTGGTTCTTCTCCTGCAAAGACAGGGATAATGTTTCCAATCTCTT 984
Query 778 CTTCTCCAAACAGTAACAGACGCATAGGGAAACAATTCCCTTTCTTGCAAGAAGAAGAAA 837
||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||
Sbjct 985 CTTCTCCAAACAGTACCAGAAGCATAGCAAAACAATTCCCTTTCTTGCAAGAAGAAGAAA 1044
Query 838 GCTCGAGAACCGCATCGTTGTGTGAGAGAATGACGAGTTGCATCCATGACTCTGATTGTG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 GCTCGAGAACCGCATCGTTGTGTGAGAGAATGACGAGTTGCATCCATGACTCTGATTGTG 1104
Query 898 CTCTCTCTCTTCTGTCATCCTCCTCGTCGTCAGTCCCTCATTTGCTTCAGCCACCACTTT 957
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1105 CTCTCTCTCTTCTGTCATCCTCCTCGTCGTCAGTCCCTCATTTGCTTCAACCACCACTTT 1164
Query 958 CTTTGTCCCAAGAAGCAGTTGAGACAGTTTTTTACGGGTCGGCATTGTTTGAGAATGCGA 1017
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1165 CTTTGTCCCAAGAAGCAGTTGAGACAGTTTTTTACGGGTCGGGATTGTTTGAGAATGCGA 1224
Query 1018 GTGCAGTCTCTGATGGATCGGTTATATCCGGTAATGAGGCTGTCCCTCTTCCGCAAACGT 1077
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||| || |
Sbjct 1225 GTGCAGTCTCTGATGGATCGGTTATATCCGGTAACGAGGCTGTCCGTCTTCCGCAGACAT 1284
Query 1078 TCCCGTTTCATTGGGAGTAGTATAAGAAGAAGAAG-TAG 1115
|||||||||||||||||||||| ||||||||| || |||
Sbjct 1285 TCCCGTTTCATTGGGAGTAGTAGAAGAAGAAGTAGGTAG 1323
> AT5G50570.1 | Symbols: SPL13A, SPL13 | Squamosa promoter-binding
protein-like (SBP domain) transcription factor family protein
| chr5:20582083-20584559 REVERSE LENGTH=1776
Length=1776
Score = 1775 bits (961), Expect = 0.0
Identities = 1068/1119 (95%), Gaps = 9/1119 (1%)
Strand=Plus/Plus
Query 4 AAAAA-CAAAATCTTTGAATGGACTGGAATTTCAAAGTTAGCTCTGGTTATTTATCTGGA 62
||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 207 AAAAAGCACAATCTTTGAATGGACTGGAATTTCAAACTTAGCTCTGGTTATTTATCTGGA 266
Query 63 TTCGATCAAGAACCGGATTTATCACCAATGGATGGTTCGATCTCGTTTGGTGGGTCTTCA 122
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 267 TTCGATCAAGAACCAGATTTATCACCAATGGATGGTTCGATCTCGTTTGGTGGGTCGTCA 326
Query 123 CAGTCAAAAGGGGAATTTTCATTTGATCTGAAACTTGGAAGAAACAATGGAAACTCTTCC 182
|||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 327 CAGTCAAAAGCGGATTTTTCATTTGATCTAAAACTTGGAAGAAACATTGGAAACTCTTCC 386
Query 183 TCTGTTTTTGGTGATACAGAGCAAGTGATAAGTCTAAGTAAGTGGAAAGAGAGTTCTTTG 242
||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||
Sbjct 387 TCTGTTTTTGGTGATACAGAGCAAGTGATTAGTCTTAGTAAGTGGAAAGATAGTGCTTTA 446
Query 243 GCTAAACCAG-AGAGTTCGAGAAGTTCGAGTTCAAAGAGAACAAGAGGGAACGGTGCTGG 301
|||||||||| || |||| ||||| |||||||||||||||||||||||||| |||| |||
Sbjct 447 GCTAAACCAGAAG-GTTCAAGAAGCTCGAGTTCAAAGAGAACAAGAGGGAATGGTGTTGG 505
Query 302 AACCAACCAGATGCCGATTTGT-TTAGTTGATGGATGTGATTCTGATTTTAGTAATTGTA 360
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 506 AACCAACCAGATGCCGATTTGTCTT-GTTGATGGATGTGATTCTGATTTTAGTAATTGTA 564
Query 361 GAGAGTATCATAAGAGACATAAGGTTTGTGATGTTCATTCAAAAACTCCTGTGGTTACTA 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 565 GAGAGTATCATAAGAGACATAAAGTTTGTGATGTTCATTCAAAAACTCCTGTGGTTACTA 624
Query 421 TTAATGGTCACAAGCAGAGGTTTTGTCAACAATGTAGCAGGTTTCATGCTTTGGAAGAGT 480
|||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 625 TTAATGGTCATAAACAGAGGTTTTGTCAACAATGCAGCAGGTTTCATGCTTTGGAGGAGT 684
Query 481 TTGATGAAGGGAAGAGAAGTTGTAGAAAACGTCTTGATGGACATAATCGAAGAAGACGGA 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 685 TTGATGAAGGGAAGAGAAGTTGTAGGAAACGTCTTGATGGACATAATCGAAGACGACGGA 744
Query 541 AGCCGCAGCCTGAACATATCGGTCGTCCTGCGAACTTCTTTACGGGTTTTCAAGGTAGCA 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 745 AGCCGCAGCCTGAACATATCGGTCGTCCTGCCAACTTCTTTACGGGTTTTCAAGGTAGCA 804
Query 601 AATTGCTAGAGTTTTCGGGTGGTTCACATGTGTTTCCAACTACATCTGTGTTGAACCCGA 660
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 AATTGCTAGAGTTTTCTGGTGGTTCACATGTGTTTCCAACTACATCTGTGTTGAACCCGA 864
Query 661 GCTGGGGAAATAGTCTTGTAAGCGTTGCTGTGGCCGCCAATGGTTCGAGTTACGGGCAGA 720
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 865 GCTGGGGAAATAGTCTTGTAAGCGTTGCTGTAGCCGCCAATGGTTCGAGTTATGGGCAGA 924
Query 721 ACCAGAGCTA---TGTTGGTTCTTCTCCTGCTAAGACAGGGATAATGTTTCCAATCTCTT 777
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 925 GCCAGAGCTATGTTGTTGGTTCTTCTCCTGCAAAGACAGGGATAATGTTTCCAATCTCTT 984
Query 778 CTTCTCCAAACAGTAACAGACGCATAGGGAAACAATTCCCTTTCTTGCAAGAAGAAGAAA 837
||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||
Sbjct 985 CTTCTCCAAACAGTACCAGAAGCATAGCAAAACAATTCCCTTTCTTGCAAGAAGAAGAAA 1044
Query 838 GCTCGAGAACCGCATCGTTGTGTGAGAGAATGACGAGTTGCATCCATGACTCTGATTGTG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 GCTCGAGAACCGCATCGTTGTGTGAGAGAATGACGAGTTGCATCCATGACTCTGATTGTG 1104
Query 898 CTCTCTCTCTTCTGTCATCCTCCTCGTCGTCAGTCCCTCATTTGCTTCAGCCACCACTTT 957
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1105 CTCTCTCTCTTCTGTCATCCTCCTCGTCGTCAGTCCCTCATTTGCTTCAACCACCACTTT 1164
Query 958 CTTTGTCCCAAGAAGCAGTTGAGACAGTTTTTTACGGGTCGGCATTGTTTGAGAATGCGA 1017
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1165 CTTTGTCCCAAGAAGCAGTTGAGACAGTTTTTTACGGGTCGGGATTGTTTGAGAATGCGA 1224
Query 1018 GTGCAGTCTCTGATGGATCGGTTATATCCGGTAATGAGGCTGTCCCTCTTCCGCAAACGT 1077
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||| || |
Sbjct 1225 GTGCAGTCTCTGATGGATCGGTTATATCCGGTAACGAGGCTGTCCGTCTTCCGCAGACAT 1284
Query 1078 TCCCGTTTCATTGGGAGTAGTATAAGAAGAAGAAG-TAG 1115
|||||||||||||||||||||| ||||||||| || |||
Sbjct 1285 TCCCGTTTCATTGGGAGTAGTAGAAGAAGAAGTAGGTAG 1323
> AT3G57920.1 | Symbols: SPL15 | squamosa promoter binding protein-like
15 | chr3:21444321-21446035 REVERSE LENGTH=1377
Length=1377
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 438 AGGTTTTGTCAACAATGTAGCAGGTTTCA 466
|||||||||||||||||||||||||||||
Sbjct 475 AGGTTTTGTCAACAATGTAGCAGGTTTCA 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54768794595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5