BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949616
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50750.1 | Symbols: RGP4 | reversibly glycosylated polypepti... 1688 0.0
AT3G08900.1 | Symbols: RGP3, RGP | reversibly glycosylated poly... 438 5e-122
> AT5G50750.1 | Symbols: RGP4 | reversibly glycosylated polypeptide
4 | chr5:20640992-20642660 FORWARD LENGTH=1359
Length=1359
Score = 1688 bits (914), Expect = 0.0
Identities = 1020/1072 (95%), Gaps = 3/1072 (0%)
Strand=Plus/Plus
Query 8 TAAGTACCAAAAAATGGCGGGCTACAACCTCGAAGGTATCAAAGCGGCACCTTTGAAGGA 67
|||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| ||
Sbjct 63 TAAGTACC-AAAAATGGCGGGCTACAACCTCGAAGCTATCGAAGCGGCACCTTTGAAAGA 121
Query 68 CGATGTGGATATTGTGATCCCAACCATCAGAAGCCTCGACTTTCTAGAACAATGGAGACC 127
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 122 CGATCTGGATATTGTGATCCCAACCATCAGAAGCCTCGACTTTCTAGAGCAATGGAGACC 181
Query 128 ATTTTTGCAGCATTACCACTTGATCATTGTCCAAGATGGAGACCCTTCGATCAAGATTAA 187
||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 182 ATTTTTGCACCATTACCACCTGATCATTGTCCAAGATGGAGACCCTTCCATCAAGATCCG 241
Query 188 AGTTCCCGAGGGTTATGACTACGAGCTCTACAACCGTAATGATATCAACAGGATCCTTGG 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AGTTCCCGAGGGTTATGACTACGAGCTCTACAACCGTAATGATATCAACAGGATCCTTGG 301
Query 248 TCCTAGAGCTAATTGTATCTCATACAAAGATGGTGGTTGTCGTTGCTTCGGCTTCATGGT 307
||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 302 TCCAAGAGCTAATTGTATCTCCTACAAAGATGGTGGTTGTCGCTGCTTTGGCTTCATGGT 361
Query 308 TTCGAAAAAGAAGTATATCTACACCATTGATGATGATTGCTTTGTGGCAAAGGATCCAAG 367
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TTCTAAAAAGAAGTATATCTACACCATTGATGATGATTGCTTTGTGGCAAAGGATCCAAG 421
Query 368 TGGGAAAGAGATCAATGTGATAGCTCAGCACATAAAGAACCTTGAAACACCTTCAACACC 427
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TGGGAAAGACATCAATGTGATAGCTCAGCACATAAAGAACCTTGAAACACCTTCAACACC 481
Query 428 ACACTACTTTAACACTCTCTATGACCCTTTTAGAGAAGGAACTGATTTCGTCAGAGGGTA 487
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 482 ACACTACTTCAACACTCTCTATGACCCTTTTAGAGATGGAACTGATTTCGTCAGAGGGTA 541
Query 488 TCCTTTCAGTTTAAGGGAAGGTGTCCAAACTGCCATATCTCATGGGCTTTGGCTCAACAT 547
|||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 542 TCCTTTCAGTCTAAGGGAAGGTGTCCAAACCGCCATATCTCATGGTCTTTGGCTCAACAT 601
Query 548 CCCTGATTACGATGCTCCAACCCAACTCGTGAAGCCCCGGGAACGGAACACGAGGTATGT 607
|||||| || ||||| ||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 602 CCCTGACTATGATGCCCCAACCCAACTTGTGAAGCCCCGCGAACGTAACACGAGGTATGT 661
Query 608 TGATGCAGTGATGACAATCCCAAAAGGAGTATTGTACCCAATGTGTGGCATGAATCTTGC 667
|||||||| |||||||| |||||| |||||||||||||||||||||| |||||||||||
Sbjct 662 GGATGCAGTAATGACAATTCCAAAAAGAGTATTGTACCCAATGTGTGGTATGAATCTTGC 721
Query 668 TTTCAATAGAGAGCTTGTTGGGCCTGCTATGTACTTTGGCCTTATGGGTGAAGGCCAGCC 727
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 722 TTTCAATAGAGAGCTTGTTGGACCTGCTATGTACTTTGGACTTATGGGTGAAGGCCAGCC 781
Query 728 CATTTCTCGGTACGATGACATGTGGGCTGGTTGGGCAGCCAAGGTGGTGTGTGACCAGTT 787
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 782 CATTTCTCGGTACGATGACATGTGGGCTGGTTGGGCAGCAAAGGTGGTGTGTGACCACTT 841
Query 788 AGGCTTTGGGGTCAAGACTGGGT-TGCCGTATCTGTGGCACAGCAAAGCCAGTAACCCGT 846
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct 842 GGGCTTTGGGGTCAAGACT-GGTCTGCCGTATCTGTGGCACAGCAAAGCCAGTAACCCAT 900
Query 847 TCGTGAACCTGAAGAAAGAGCATAAGGGACTCCACTGGCAAGAAGATATGGTTCCTTTCT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCGTGAACCTGAAGAAAGAGCATAAGGGACTCCACTGGCAAGAAGATATGGTTCCTTTCT 960
Query 907 TCCAAAACCTTTGTCTCTCGAAAGAATCTGACACTGCAGCTAAATGCTATATGGAAATTT 966
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 961 TCCAAAACCTTCGTCTCTCGAAAGAATCTGACACTGCAGCTAAATGTTATATGGAAATTT 1020
Query 967 CGAAGATGACAAAAGAAAAGCTTACTAAAGTGGATCCTTACTTTGAGAAATTGGCAGATG 1026
| || ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 1021 CAAATATGACAAAAGAAAAGCTCACTAAAGTGGATCCTTACTTTGAGAAGTTGGCTGATG 1080
Query 1027 CAATGGTCACTTGGATTGAGGCGTGGGAGGAGCTTAACCCGCCGGTTAAGAA 1078
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CAATGGTGGTTTGGATTGAGGCGTGGGAGGAGCTTAACCCGCCGGTTAAGAA 1132
> AT3G08900.1 | Symbols: RGP3, RGP | reversibly glycosylated polypeptide
3 | chr3:2708086-2709714 REVERSE LENGTH=1350
Length=1350
Score = 438 bits (237), Expect = 5e-122
Identities = 630/813 (77%), Gaps = 53/813 (7%)
Strand=Plus/Plus
Query 78 ATTGTGATCCCAACCA-TCAGAAGCCTCGACTTTCTAGAACA-ATGGAGACCATT-TTTG 134
|||||||| || || | || ||| ||||||||| || | | | ||| |||| || ||||
Sbjct 58 ATTGTGATACCTACGATTC-GAAACCTCGACTTCCTTG-AGATGTGGCGACCTTTCTTTG 115
Query 135 CAGCATTACCACTTGATCATTGTCCAAGATGGAGACCCTTCGATCAAG--ATTAA-AGTT 191
|||| || || ||||||||||| |||||||| || ||||||| ||| || || | ||
Sbjct 116 -AGCAGTATCATTTGATCATTGTTCAAGATGGTGATCCTTCGA--AAGTCATCAACA-TT 171
Query 192 CCCG-AGGGTTATGACTACGAGCTCTACAACCGTAATGATATCAA-CAGGATCCTT-GGT 248
|| | |||||| ||||||||||||||||||| | || || ||||| | | || ||| |||
Sbjct 172 CCAGTAGGGTT-TGACTACGAGCTCTACAACAGGAACGACATCAATC-GAAT-CTTGGGT 228
Query 249 -CCTAGAG-CTAATTGTATCTCATACAAAGA-TGGTGGTTGTCGTTGCTTCGGCTT-CAT 304
|| || | || ||| || || | ||| || | || ||||||||||||||| || |||
Sbjct 229 CCCAAG-GCCT-CTTGCATTTCCTTCAAGGACT-CTGCTTGTCGTTGCTTCGG-TTACAT 284
Query 305 GGTTTCGAAAAAGAAGTATATCTACACCATTGATGATGATTGCTTTGTGGCAAAGGATCC 364
||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 285 GGTCTCCAAAAAGAAGTACATCTACACCATTGATGATGATTGCTTTGTTGCAAAGGATCC 344
Query 365 AAGTGGGAAAGAGATCAATGTGATAGCTCAGCACATAAAGAACCT-TGAAACACCTTCAA 423
|| |||||||||||||||| | | | ||||| || |||||||| | | | || ||||
Sbjct 345 AACAGGGAAAGAGATCAATGCGCTTGAGCAGCATATCAAGAACCTCTTAT-CTCCATCAA 403
Query 424 CACCACACTACTTTAACACTCTCTATGACCCTTTTAGAGAAGGAACTGA-TTTCGT-CAG 481
| || || | ||||||||| || ||||| || | ||||| || | || ||| || | |
Sbjct 404 CTCCGCATTTCTTTAACACACTTTATGATCCATACAGAGATGGGGCAGACTTT-GTTC-G 461
Query 482 AGGGTATCCTTTCAGTTTAAGGGAAGGTGTCCA-AACTGCCATATCTCATGGGCTTTGGC 540
|| || ||||||||| | | ||||||| ||| ||| || | |||||||| || ||||
Sbjct 462 TGGATACCCTTTCAGTATGCGCGAAGGTG-CCATAACCGCGGTCTCTCATGGCCTCTGGC 520
Query 541 TCAACATCCCTGATTACGATGCTCCAACCCAACTCGTGAAGCCCCGGGAACGGAACA--C 598
||||||| ||||| || |||||||| || || || ||||| || | || | || | |
Sbjct 521 TCAACATTCCTGACTATGATGCTCCCACTCAGCTTGTGAAACCTCTTGA--GAAAAATTC 578
Query 599 GAGGTATGTTGATGCAGTGATGACAAT-CCCAAAAGGAG-TATTGTACCCAATGTGTGGC 656
||||||||||||||||| ||||| || |||||| ||| | || | || | |||||||
Sbjct 579 CAGGTATGTTGATGCAGTCATGACCATTCCCAAA-GGAACTCTTTTTCCTA-TGTGTGGT 636
Query 657 ATGAATCTTGCTTTCAATAGAGAGCTTG-TTGGGCCTGCTATGTACTTTGGCCTTATGGG 715
||||| |||||||| | | ||||| | |||| || |||||||||||||| ||||||||
Sbjct 637 ATGAACCTTGCTTTTGACCGTGAGCT-GATTGGTCCGGCTATGTACTTTGGGCTTATGGG 695
Query 716 TGAAGGCCAGCCCATTTCTCGGTACGATGACATGTGGGCTGGTTGG-GCAGCCAAGGTGG 774
||| || ||||| ||| || || || |||||||||||||||||| | | |||||||
Sbjct 696 TGATGGACAGCCAATTGGACGCTATGACGACATGTGGGCTGGTTGGTGT-GTCAAGGTGA 754
Query 775 TGTGTGACCAGTTAGGCTTTGGG-GTCAAGACTGGGTT-GCCGTATC-TGTGGCACAGCA 831
| |||||||| | || | ||| || ||||| ||||| ||| || | | ||||||||||
Sbjct 755 TATGTGACCACATGGGATG-GGGAGTGAAGAC-GGGTTTGCCTTA-CATATGGCACAGCA 811
Query 832 AAGCCAGTAACCCGTTCGTGAACCTGAAGAAAG 864
||||||| ||||| |||||||||||||| ||||
Sbjct 812 AAGCCAGCAACCCATTCGTGAACCTGAA-AAAG 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54919396230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5