BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949621
Length=926
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50800.1 | Symbols: SWEET13, AtSWEET13 | Nodulin MtN3 family... 1387 0.0
AT4G25010.1 | Symbols: SWEET14, AtSWEET14 | Nodulin MtN3 family... 725 0.0
> AT5G50800.1 | Symbols: SWEET13, AtSWEET13 | Nodulin MtN3 family
protein | chr5:20665077-20667304 REVERSE LENGTH=1252
Length=1252
Score = 1387 bits (751), Expect = 0.0
Identities = 869/927 (94%), Gaps = 3/927 (0%)
Strand=Plus/Plus
Query 1 TAATCCAGAAACCAGAAAGAAATGGCTCTAACTCACAATGTATGGGCATTTGTGTTCGGC 60
||||| ||||| || ||||||||||||||||| ||||| |||||||||||||||| ||
Sbjct 145 TAATCAAGAAA-CATCAAGAAATGGCTCTAACTAACAATTTATGGGCATTTGTGTTTGGA 203
Query 61 ATCATGGGTAACATCATATCATTCGTCGTGTTCTTGGCCCCAGTGCCCACGTTTGTACGG 120
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 204 ATCTTGGGTAACATCATATCATTCGTCGTGTTCTTGGCCCCAGTGCCCACTTTTGTAAGG 263
Query 121 ATATGCAAGAAGAAATCAACCGAAGGATTTCAGTCTCTTCCCTATGTTTCAGCTCTTTTT 180
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 264 ATATGCAAGAAGAAATCAACCGAAGGTTTTCAGTCTCTACCCTATGTTTCAGCACTTTTT 323
Query 181 AGCGCGATGCTTTGGATTTACTACGCTATGCAAAAGGATGGCTCAGGCTTCCTTCTCATC 240
||||||||||||||||||||||||||||||||||| |||||| ||| ||| |||||||||
Sbjct 324 AGCGCGATGCTTTGGATTTACTACGCTATGCAAAAAGATGGCACAGCCTTTCTTCTCATC 383
Query 241 ACCATAAACGCTGTTGGATGCGTCATCGAAACCATCTACATCGTCCTCTTTGTAACCTAT 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 384 ACCATAAACGCTTTTGGATGCGTCATCGAAACCATCTACATCGTCCTCTTTGTCTCCTAT 443
Query 301 GCTAACAAGAAAACTAGAATATCCACTTTGAAAGTTCTTGGTCTCTTGAACTTTTTGGGT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 GCTAACAAGAAAACTAGAATATCCACTTTGAAAGTTCTTGGTCTCTTGAACTTTTTGGGA 503
Query 361 TTTGCTGCCATTGTTCTTGCCTGCGAGCTATTAACCGAAGGTTCGACACGTGAGAAAGTT 420
||||| ||||||||||||| ||||||||| |||||| ||||||| |||||||||||||||
Sbjct 504 TTTGCCGCCATTGTTCTTGTCTGCGAGCTCTTAACCAAAGGTTCAACACGTGAGAAAGTT 563
Query 421 CTCGGAGGGATTTGCGTTGGGTTTTCCGTCAGTGTCTTCGCAGCTCCTTTGAGTATCATG 480
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 564 CTCGGAGGGATTTGCGTTGGATTTTCCGTCAGTGTTTTCGCAGCTCCTTTGAGTATCATG 623
Query 481 AGAGTGGTGGTACGAACAAGAAGTGTGGAGTTTATGCCTTTCTCTTTATCGTTGTTTCTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 AGAGTGGTGGTACGAACAAGAAGTGTGGAGTTTATGCCTTTCTCTTTATCGTTGTTTCTT 683
Query 541 ACAATTAGCGCCGTCACGTGGCTCTTCTACGGTCTCGCTATTAAAGACTTCTACGTTGCG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 ACAATTAGCGCCGTCACGTGGCTCTTCTACGGTCTCGCTATTAAAGACTTCTACGTTGCC 743
Query 601 CTTCCAAATGTGTTGGGCGCGTTCTTAGGAGCTGTTCAAATGATTCTCTACATAATTTTC 660
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 CTTCCAAATGTATTAGGCGCGTTCTTAGGAGCTGTTCAAATGATTCTCTACATAATTTTC 803
Query 661 AAGTACTACAAAACTCCTATGGCTCAGAAGACAGACAAATCTAAAGCCGTGTCCGATCAT 720
|| ||||||||||||||| |||||||||||||||| ||||| |||| |||||||||||||
Sbjct 804 AAATACTACAAAACTCCTGTGGCTCAGAAGACAGATAAATCCAAAGACGTGTCCGATCAT 863
Query 721 TCCATCGACATAGCAAAGCTAACCACCGTCACACCCGGTCCAATTTCTG-ATTCAGCAGT 779
||||||||||||||||||||||| ||||||| ||||||| || ||| || |||| || ||
Sbjct 864 TCCATCGACATAGCAAAGCTAACGACCGTCATACCCGGTGCAGTTT-TGGATTCCGCGGT 922
Query 780 TCATCAACCGCCTGTTATTCACAATGTTCCCGAGACTCAAATTCAAGTGACTGAGGTCAA 839
|||||||||||||| | |||||||||||||||||||| |||||||| |||| ||||||||
Sbjct 923 TCATCAACCGCCTGCTCTTCACAATGTTCCCGAGACTAAAATTCAATTGACCGAGGTCAA 982
Query 840 GAGCCAAAACATAACTGATCCAAAAGATCAAATCAACAAGGATGTCGAGAACCAAAGTCA 899
|||||| ||||| || ||||| ||||| || ||||||||||||||| |||| ||||||||
Sbjct 983 GAGCCAGAACATGACCGATCCGAAAGACCAGATCAACAAGGATGTCCAGAAACAAAGTCA 1042
Query 900 AGTTTAAGTAGTGAATCTTATTTAGAG 926
|||||||||||||||||||||||||||
Sbjct 1043 AGTTTAAGTAGTGAATCTTATTTAGAG 1069
> AT4G25010.1 | Symbols: SWEET14, AtSWEET14 | Nodulin MtN3 family
protein | chr4:12854385-12856541 REVERSE LENGTH=1281
Length=1281
Score = 725 bits (392), Expect = 0.0
Identities = 614/721 (85%), Gaps = 15/721 (2%)
Strand=Plus/Plus
Query 20 AAATGGCTCTAACTCACAATGTATGGGCATTTGTGTTCGGCA-TCATGGGTAACATCATA 78
|||||| ||| |||||||| |||| |||| || || || | || ||||||||||||||
Sbjct 189 AAATGGTTCTCACTCACAACGTATTGGCAGTTACATTTGG-AGTCCTGGGTAACATCATA 247
Query 79 TCATTCGTCGTGTTCTTGGCCCCAGTGCCCACGTTTGTACGGATATGCAAGAAGAAATCA 138
|| ||| |||| |||||||| |||||||| || |||||| | || |||||||| |||||
Sbjct 248 TCGTTCATCGTTTTCTTGGCACCAGTGCCAACTTTTGTAAGAATCTGCAAGAAAAAATCG 307
Query 139 ACCGAAGGATTTCAGTCTCTTCCCTATGTTTCAGCTCTTTTTAGCGCGATGCTTTGGATT 198
| ||||| ||| | || |||||||| || ||||| || |||||||||||||| ||||||
Sbjct 308 ATAGAAGGTTTTGAATCACTTCCCTACGTGTCAGCCCTCTTTAGCGCGATGCTATGGATT 367
Query 199 TACTACGCTATGCAAAAGGATGGCTCAGGCTTCCTTCTCATCACCATAAACGCTGTTGGA 258
||||| ||| ||||||| ||||| |||||||||||||||| |||||||||||||| |||
Sbjct 368 TACTATGCTCTGCAAAAAGATGGAGCAGGCTTCCTTCTCATTACCATAAACGCTGTGGGA 427
Query 259 TGCGTCATCGAAACCATCTACATCGTCCTCTTTGTAACCTATGCTAACAAGAAAACTAGA 318
||| |||||||||||||||||||| ||||||| | |||||||||||||||||| |||||
Sbjct 428 TGCTTCATCGAAACCATCTACATCATCCTCTTCATCACCTATGCTAACAAGAAAGCTAGA 487
Query 319 ATATCCACTTTGAAAGTTCTTGGTCTCTTGAACTTT-TTGGGTTTTGCTGCCATTGTTCT 377
||||| |||||||| |||||||| |||||||| ||| |||||||||||||| ||| ||||
Sbjct 488 ATATCAACTTTGAAGGTTCTTGGGCTCTTGAA-TTTCTTGGGTTTTGCTGCTATTATTCT 546
Query 378 TGCCTGCGAGCTATTAACCGAAGGTTCG-ACACGTGAGAAAGTTCTCGGAGGGATTTGCG 436
| ||||||||| ||||| |||| ||| || ||||||||||| || |||||||||||||
Sbjct 547 CGTCTGCGAGCTCCTAACCAAAGGATCGAAC-CGTGAGAAAGTCCTTGGAGGGATTTGCG 605
Query 437 TTGGGTTTTCCGTCAGTGTCTTCGCAGCTCCTTTGAGTATCATGAGAGTGGTGGTACGAA 496
| || ||||| || |||| ||||||||||||||||| ||||||||||||||| ||||||
Sbjct 606 TCGGATTTTCTGTTTGTGTTTTCGCAGCTCCTTTGAGCATCATGAGAGTGGTGATACGAA 665
Query 497 C-AAGAAGTGTGGAGTTTATGCCTTTCTCTTTATCGTTGTTTCTTACAATTAGCGCCGTC 555
| ||| |||||||||||||||||||||||| |||| |||||||||||||| |||||| |
Sbjct 666 CAAAG-AGTGTGGAGTTTATGCCTTTCTCTCTATCATTGTTTCTTACAATCAGCGCCATT 724
Query 556 ACGTGGCTCTTCTACGGTCTCGCTATTAAAGACTTCTACGTTGCGCTTCCAAATGTGTTG 615
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 725 ACGTGGCTCTTCTACGGTCTTGCTATTAAAGACTTCTACGTTGCGCTTCCAAATATATTG 784
Query 616 GGCGCGTT-CTTAGGAGCTGTTCAAATGATTCTCTACATAATTTTCAAGTACTACAAAAC 674
|| ||||| || ||||| || ||||||||||| ||| | || |||||||||||||||||
Sbjct 785 GGTGCGTTTCTC-GGAGCAGTCCAAATGATTCTATACGTCATATTCAAGTACTACAAAAC 843
Query 675 TCC--TA-TGGCTCA-GAAGACAGACAAATCTAAAGCCGTGTCCGATCATTCCATCGACA 730
||| || ||| | | || |||||| || | ||| | ||||| |||||||||||| |||
Sbjct 844 TCCACTAGTGGTTGATGA-GACAGAGAAGCCCAAAACGGTGTCGGATCATTCCATCAACA 902
Query 731 T 731
|
Sbjct 903 T 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45260966447
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5