BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949632
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50900.1 | Symbols: | ARM repeat superfamily protein | chr5... 2667 0.0
> AT5G50900.1 | Symbols: | ARM repeat superfamily protein | chr5:20704804-20706778
REVERSE LENGTH=1975
Length=1975
Score = 2667 bits (1444), Expect = 0.0
Identities = 1625/1713 (95%), Gaps = 9/1713 (1%)
Strand=Plus/Plus
Query 1 TCAGTCAAACCCTAATTCCGATGCCGGTACCTAATTCCGACGACGGTGACCGGACTCTAA 60
||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | |||
Sbjct 41 TCAGTCAAACCCTAATTCCGATGACGGTACCTAATTCCGACGATGGTGACCGGAGTTTAA 100
Query 61 CGGAGGTTATCACTTCTCTCCTTGACTCTAT-CCCTAACCTTCGTAGCTTCAAGTCCAAA 119
||||||||||||| ||||| | |||||||| ||| ||||||| ||||||||||| |||
Sbjct 101 CGGAGGTTATCACCTCTCTTATCGACTCTATACCC-AACCTTCTTAGCTTCAAGTGTAAA 159
Query 120 TGGTCTTCAATTCGCGCCAAACTCGCCGATCTCAAAACTCAGCTCTCCGATTTCTCCGAT 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 TGGTCATCAATTCGCGCCAAACTCGCCGATCTCAAAACTCAGCTCTCCGATTTCTCCGAT 219
Query 180 TTCGCCGGCTCTTCTTCAAACAAACTCGCTC-TAGATCTTCTCGTTTCAGTTCGCGAGAC 238
||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct 220 TTCGCCGGCTCTTCTTCAAACAAACTCGC-CGTAGATCTTCTAGTTTCAGTTCGCGAGAC 278
Query 239 GCTAAGCGACGCCGTTGCCGTTGCGGCGAGGTGTGAAGGACCAGATTTAGCTGAAGGAAA 298
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 279 GCTAAACGACGCCGTTGCCGTTGCGGCGAGGTGTGAAGGACCAGATTTAGCTGAAGGTAA 338
Query 299 GCTTAAAACGCAGAGCGAGGTTGATTCAGTCATGGCGAGACTTGATCGTCATGTGAAAGA 358
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 339 GCTTAAAACGCAGAGTGAGGTTGATTCAGTCATGGCGAGACTCGATCGTCATGTGAAAGA 398
Query 359 TGCTGAGGTTTTGATTAAGAGTGGTCTTCTGATTGATAACGGAATCGTCGTCTCCGGATT 418
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 399 TGCTGAGGTTTTGATTAAGAGTGGTCTTCTGATTGATAACGGAATCGTCGTTTCTGGATT 458
Query 419 TTCGATTTCGTCGAAGAAGGAAGCTGTTCGATTAGAAGCGAGGAATTTAGTGATTCGATT 478
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 459 TTCGATTTCGTCGAAGAAGGAAGCTGTTAGATTAGAAGCGAGGAATCTAGTGATTAGATT 518
Query 479 ACAGATCGGTGGAGTTGAATCGAAGAATTCAGCGATTGATTCGTTGATTGAATTACTTCA 538
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACAGATCGGTGGTGTTGAATCGAAGAATTCAGCGATTGATTCGTTGATTGAATTACTTCA 578
Query 539 GGAAGATGATAAGAACGTGATGATTTGTGTTGCTCAAGGAGTTGTTCCTGTTTTGGTTAG 598
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 579 GGAAGATGATAAGAACGTGATGATTTGTGTAGCTCAAGGAGTTGTTCCTGTTTTAGTTAG 638
Query 599 GTTACTTGATTCGTGTTCTTTAGTGATGAAGGAGAAGACTGTTACTGTGATTTCTAGAAT 658
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 639 GTTACTTGATTCGTGTTCTTTAGTGATGAAGGAGAAGACTGTTGCTGTGATTTCTAGAAT 698
Query 659 CTCTATGGTTGAGAGTAGTAAACATGTGTTAATAGCTGAAGGATTGTCTTTATTGAATCA 718
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 699 CTCTATGGTTGAGAGTAGTAAACACGTGTTAATAGCTGAAGGATTGTCTCTATTGAATCA 758
Query 719 TCTCCTTCGTGTATTGGAGTCAGGAAGTGGTTTTGCTAAAGAGAAAGCTTGTATTGCTTT 778
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 759 TCTCCTTCGTGTATTGGAGTCAGGAAGTGGTTTTGCTAAAGAGAAAGCTTGTGTTGCTTT 818
Query 779 ACAGGCGTTGAGTTTGTCGAAGGAGAACGCTAGAGCGATTGGTTGTAGAGGCGGAATCTC 838
|| || ||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 819 GCAAGCTTTGAGTTTGTCTAAGGAGAACGCGAGAGCTATTGGTTGTAGAGGTGGAATCTC 878
Query 839 GTCTTTATTGGAGATATGTCAAGGTGGGAGTCCTGGCTCTCAGGCTTTTGCTGCTGGTGT 898
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 879 GTCTTTGTTGGAGATATGTCAAGGTGGGAGTCCTGGTTCTCAGGCTTTTGCTGCTGGTGT 938
Query 899 GTTGAGGAATTTGGCTTTGTTTGTAGAGACTAAAGAGAATTTCGTTGAGGAAAACGCGAT 958
||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 939 GTTGAGGAACTTAGCTTTGTTTGGAGAGACTAAAGAGAATTTCGTTGAGGAAAACGCGAT 998
Query 959 TTTCGTGCTTATTAGTATGGTTTCTTCAGGTACGTCTTTGGCTCAAGAGAATGCTGTTGG 1018
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 999 TTTCGTGCTTATTAGTATGGTTTCTTCAGGTACTTCTTTGGCTCAAGAGAATGCTGTTGG 1058
Query 1019 ATGTTTGGCTAATTTAACGAGTGGAGATGAGGATTTGATGATATCTGTTGTTAGAGAAGG 1078
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1059 TTGTTTGGCTAATTTAACGAGTGGTGATGAGGATTTGATGATATCTGTTGTTAGAGAAGG 1118
Query 1079 AGGGATTCAGTGTTTGAAGAGTTTTTGGGATTCTGTTTCTAATGTTAAGAGTCTTGAGGT 1138
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1119 AGGGATTCAGTGTTTGAAGAGTTTTTGGGATTCTGTTTCTAGTGTTAAGAGTCTTGAGGT 1178
Query 1139 TGGAGTTGTGCTTTTGAAGAATTTAGCTTTGTGTCCTATTGTTAGAGAGGTTGTTATATC 1198
||||||||||||| ||||||| ||||| |||||||||||||| ||||| |||||||||||
Sbjct 1179 TGGAGTTGTGCTTCTGAAGAACTTAGCGTTGTGTCCTATTGTGAGAGAAGTTGTTATATC 1238
Query 1199 CGAAGGATTTATCCCTCGTTTGGTTCCGGTGTTGAGTTGTGGGGTTCTCGGTGTGAGAAT 1258
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1239 CGAAGGGTTTATCCCTCGTTTGGTTCCGGTTTTGAGTTGTGGGGTTCTCGGTGTGAGAAT 1298
Query 1259 CGCAGCTGCAGAAGCTGTTTCTTCGCTAGGTTTCAGCTCGAAAAGCCGAAAAGAATTGGG 1318
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1299 TGCAGCTGCGGAAGCTGTTTCCTCGCTAGGTTTCAGCTCGAAAAGCCGAAAAGAAATGGG 1358
Query 1319 TGAAAGCGGATGCATTGGTCCATTGATTGATATGTTAGATGGTAAAGCTGTGGAAGAGAA 1378
|||||| ||||| || | |||||||||||||||||||||||||||||| | ||||||||
Sbjct 1359 TGAAAGTGGATGTATCGTTCCATTGATTGATATGTTAGATGGTAAAGCCATTGAAGAGAA 1418
Query 1379 AGAAGCAGCTTCTAAAGCTCTATCGAC-CTTATTGGTGTGCACGAGTAATAGAAAGATAT 1437
||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |
Sbjct 1419 AGAAGCAGCTTCTAAAGCTCTATCGACGCTT-TTGGTGTGCACGAGTAACAGAAAGAT-T 1476
Query 1438 TT-AAGAAGAGTCAGAAGGGTGTAGTCAGTCTTGTTCAGCTCTTGGACCCGAAGATTAAG 1496
|| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1477 TTCAAGAAGAGTGACAAGGGTGTAGTCAGTCTAGTTCAGCTCTTGGACCCGAAGATTAAG 1536
Query 1497 AAATTGGATAAGATATACACAGTCTCTGCGTTGGAACAGCTTGTTACTTCAAAGAAATGC 1556
|||||||||||| ||||||||||| |||||||||| |||||| |||||||||||||||
Sbjct 1537 AAATTGGATAAGCGGTACACAGTCTCGGCGTTGGAACTGCTTGTAACTTCAAAGAAATGC 1596
Query 1557 AGGAAACAAGTCGTTGCTGCTGGTGCTTGCTTGCATTTACAAAAGCTTGTGGAGATGGAT 1616
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1597 AGGAAACAAGTCGTAGCTGCTGGTGCTTGCTTGCATTTGCAAAAGCTTGTGGATATGGAT 1656
Query 1617 ATCGAAGGAGCTAAGAAACTGGCGGAGAATCTTGCCCGGAGTAAGATTTGGGGGGTCTTT 1676
| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1657 ACCGAAGGAGCTAAGAAACTGGCGGAGAATCTTTCCCGGAGTAAGATTTGGGGCGTCTTT 1716
Query 1677 ACAAGGCCATAAGAGACTGCGC-GGATACGTTT 1708
|||||||||||||||||||||| ||||||||||
Sbjct 1717 ACAAGGCCATAAGAGACTGCGCAGGATACGTTT 1749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84437316690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5