BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949638
Length=1099
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50960.1 | Symbols: NBP35, ATNBP35 | nucleotide binding prot... 1779 0.0
> AT5G50960.1 | Symbols: NBP35, ATNBP35 | nucleotide binding protein
35 | chr5:20734167-20736055 FORWARD LENGTH=1384
Length=1384
Score = 1779 bits (963), Expect = 0.0
Identities = 1049/1092 (96%), Gaps = 0/1092 (0%)
Strand=Plus/Plus
Query 1 AGAAATCACAAGTCGACGATATGGAGAACGGAGATATTCCTGAGAACGCCAACGAGCATT 60
|||| || |||||||||||||||||||||||||| ||||| ||| |||| ||||||||||
Sbjct 81 AGAAGTCTCAAGTCGACGATATGGAGAACGGAGACATTCCAGAGGACGCTAACGAGCATT 140
Query 61 GCCCAGGTCCTCAATCAGAAACTGCTGGAAAGTCAGATTCTTGTGCTGGTTGCCCTAATC 120
|||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||
Sbjct 141 GCCCAGGTCCTCAATCAGAATCTGCTGGAAAATCAGATTCTTGTGCTGGCTGCCCTAATC 200
Query 121 AGGAAGCTTGTGCCACTGCTCCTAAAGGACCTGACCCAGATTTGGTTGCCATTGCGGAGA 180
||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 201 AGGAAGCTTGTGCTACTGCTCCTAAAGGACCTGACCCAGATTTGGTTGCCATAGCAGAGA 260
Query 181 GAATGAGCACTGTTAAGCACAAGATTCTGGTTTTGTCTGGCAAGGGTGGAGTTGGTAAGA 240
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 261 GGATGAGCACTGTTAAGCACAAGATTCTGGTTTTGTCTGGCAAAGGTGGAGTTGGTAAGA 320
Query 241 GTACTTTCTCAGCTCAGCTTTCGTTTGCTCTGGCGGGCATGGATCATCAAGTAGGTCTGA 300
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 321 GTACTTTCTCAGCTCAGCTCTCGTTTGCCCTTGCGGGCATGGATCATCAAGTAGGTCTGA 380
Query 301 TGGACATTGATATATGCGGTCCAAGCATCCCAAAAATGTTAGGCCTTGAAGGGCAAGAGA 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 381 TGGACATTGATATATGCGGTCCAAGCATCCCAAAAATGTTAGGACTTGAAGGGCAAGAGA 440
Query 361 TTCACCAGAGTAACCTTGGATGGTCTCCGGTTTATGTGGAAGATAACCTTGGTGTCATGT 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 441 TTCACCAGAGTAACCTTGGATGGTCTCCGGTTTATGTGGAAGACAACCTTGGTGTCATGT 500
Query 421 CCATAGGTTTCATGCTCCCTAACTCTGATGACGCTGTGATCTGGAGAGGTCCACGCAAGA 480
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 501 CCATAGGTTTCATGCTCCCTAACTCTGATGAAGCTGTGATCTGGAGAGGGCCACGCAAGA 560
Query 481 ATGGGCTCATCAAACAGTTCTTGAAAGACGTCTACTGGGGAGAGATTGATTACCTCGTTG 540
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 561 ATGGTCTCATCAAGCAGTTCTTAAAAGACGTCTACTGGGGAGAGATTGATTACCTTGTTG 620
Query 541 TTGATGCTCCACCAGGAACCTCAGATGAACACATCTCAATCGTCCAGTACCTTCTACCCA 600
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 621 TTGATGCCCCACCAGGAACCTCAGATGAACACATCTCCATCGTCCAGTACCTTCTACCCA 680
Query 601 CGGGGATTGACGGTGCCATCATTGTCACGACACCACAGGAAGTCTCCTTGATTGATGTCA 660
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 681 CGGGGATCGACGGTGCCATCATTGTCACGACACCGCAGGAAGTCTCCTTGATTGATGTCA 740
Query 661 GAAAAGAAGTGAGCTTTTGCAAGAAAGTTGGAGTCCCCGTGCTAGGAGTAGTAGAGAACA 720
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 741 GAAAAGAAGTGAGCTTTTGCAAGAAAGTTGGAGTCCCGGTGCTAGGAGTAGTAGAGAACA 800
Query 721 TGAGTGGTTTGTCTCAACCGTTGAAGGATGTCAAGTTCATGAAGCTGGCGACAGAGACCG 780
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TGAGTGGTTTATCTCAACCGTTGAAGGATGTCAAGTTCATGAAGCTGGCGACAGAGACCG 860
Query 781 GCTCCTCCATTAACGTGACCGAAGACGTAATCGCTTGCTTAAGAGAAAACGCACCAGAGC 840
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 861 GCTCCTCCATTAACGTGACTGAAGACGTAATCGCTTGCTTAAGAAAAAACGCACCAGAGC 920
Query 841 TTCTCAACATCGTGGCTTGCAGCGAAGTGTTTGACAGCAGCGGAGGTGGTGCAGAAAGAA 900
||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 921 TTCTCGACATCGTGGCTTGTAGCGAAGTGTTTGACAGCAGCGGAGGCGGTGCAGAAAGAA 980
Query 901 TGTGTCGGGAAATGGGAGTACCGTTTCTTGGGAAAGTTCCTTTGGATCCGCAGCTTTGCA 960
||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||
Sbjct 981 TGTGTCGGGAAATGGGAGTACCGTTTCTTGGGAAAGTTCCTATGGATCCACAACTTTGCA 1040
Query 961 AAGCAGCTGAACAAGGTAAGTCATGCTTTGAGGATACCGAGTGTTTAATCAGCGCACCTG 1020
|||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 1041 AAGCAGCTGAACAAGGTAAGTCATGCTTTGAGGATAACAAGTGTTTAATAAGCGCACCTG 1100
Query 1021 CGCTTAAAAGCATCATACAGAAAGTCGTTCCTTCAACAGTGATGACCGAGTgaagaagaa 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1101 CGCTTAAAAGCATCATACAGAAAGTCGTTCCTTCAACAGTGATGACCGAGTGAAGAATAA 1160
Query 1081 gaagaagaagaa 1092
||||||||||||
Sbjct 1161 GAAGAAGAAGAA 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53865184785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5