BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949648

Length=355
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23200.1 | Symbols:  | Uncharacterised protein family (UPF04...   274    4e-73


> AT3G23200.1 | Symbols:  | Uncharacterised protein family (UPF0497) 
| chr3:8281363-8282778 FORWARD LENGTH=930
Length=930

 Score =  274 bits (148),  Expect = 4e-73
 Identities = 164/172 (95%), Gaps = 0/172 (0%)
 Strand=Plus/Plus

Query  1    CTGCTGGTTCGATTTCTTATATGGTTACTTCTGGTGGATTCTTCAGCTTCACTGCTTTCT  60
            |||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct  367  CTGCTGGTTCCATTTCTTATATGGTTACTTCTGGTGGCTTCTTTAGCTTCACTGCTTTCT  426

Query  61   GCTATCTAATAGCAGCAATGGGTTTGCAAGTCATATGGAGTTTCGGTCTTGCTATACTAG  120
            |||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct  427  GCTATCTAATAGCAGCAATGGGATTGCAAGTCATATGGAGTTTTGGTCTTGCAATACTAG  486

Query  121  ACACATTCGCCTTAGTGAGAAAGAAAACGCTTCTTAGTCCGGTTTTAGTCAG  172
            |||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct  487  ACACATTCGCATTAGTGAGAAAGAAAACGCTTCTTAGTCCAGTTTTAGTCAG  538



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16638624919


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5