BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949655
Length=1846
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00650.1 | Symbols: FRI, FLA | FRIGIDA-like protein | chr4:2... 2146 0.0
> AT4G00650.1 | Symbols: FRI, FLA | FRIGIDA-like protein | chr4:269026-271503
FORWARD LENGTH=1996
Length=1996
Score = 2146 bits (1162), Expect = 0.0
Identities = 1522/1686 (90%), Gaps = 63/1686 (4%)
Strand=Plus/Plus
Query 24 ATGGCCAATTATCCACCAACGGTGGCGGCGCAATCCTCAACGGCGGCGATTCCACTGCTG 83
||| ||||||||||||| ||||||||||||||| || ||||| |||||| ||||||||||
Sbjct 1 ATGTCCAATTATCCACCGACGGTGGCGGCGCAACCCACAACGACGGCGAATCCACTGCTG 60
Query 84 CACCAGCGACACCAATCTGAACGA-CGACGTGGAGAATTACCGGCGGTTGTCGAAACAGA 142
|||||||| |||||||||| | ||||| ||||||||||| | |||||||||||||
Sbjct 61 ---CAGCGACATCAATCTGAAC-AGCGACGAAGAGAATTACCGAAGATTGTCGAAACAGA 116
Query 143 GTCTAC-AGCTATGGAAATTTCGATCGGTCAATCTAAGCAGCCTCAATTTTTGAAATCCA 201
|||||| || |||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 117 GTCTACAAG-TATGGACATTACGATCGGTCAATCTAAGCAGCCTCAATTTTTGAAATCCA 175
Query 202 TAGACGAATTGGCTGCGTTTTCAGTTGCAGTGGAAGCATTCAAACGCCAATTCGATGATC 261
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 176 TAGACGAATTAGCTGCGTTTTCAGTTGCAGTGGAAACATTCAAACGCCAATTCGATGATC 235
Query 262 TTCAGAAGCACATCGAGTCAATCGAAAACGCAATTGATTCCAAACTCAAGAGTAACGGCG 321
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 236 TTCAGAAGCACATCGAGTCAATCGAAAACGCAATTGATTCCAAACTCGAGAGTAACGGCG 295
Query 322 CCGACCTCGCCGCTTC--TTC--CAATTTCCATCAGCCGTTGTTATCGCCTCCGCGGAAC 377
| ||||||||| | | ||||||||||||||| ||||||||||||||||||||
Sbjct 296 TTGTCCTCGCCGC-GCGGAACAATAATTTCCATCAGCCGATGTTATCGCCTCCGCGGAAC 354
Query 378 AATGCCTCCGTAGAGACCACCGTGAGTTTGAGCCAATCGTCACAGGAGCCTGCGGAGACT 437
|||| || ||||| |||||||| | | |||||||| |||| | | ||||| |
Sbjct 355 AATGTATCTGTAGAAACCACCGTCACTGTGAGCCAACCGTCTC---A------GGAGATT 405
Query 438 GTACCGGAGACGTCGAATAAAGCGGAGGGGGAACGGT-TGTGTGAGTTGATGTGTAGCAA 496
||||||||||||||||||||| |||||||||||| || | ||||||||||||||||||||
Sbjct 406 GTACCGGAGACGTCGAATAAACCGGAGGGGGAAC-GTATATGTGAGTTGATGTGTAGCAA 464
Query 497 AGGTCTGCGTAAATACATATACGCGAATATCTCTGAT-AGAGCTAAGCTAATGGAAGAGA 555
||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 465 AGGTCTGCGTAAATACATATACGCGAATATCTCTGATCA-AGCTAAGTTAATGGAAGAGA 523
Query 556 TTCCTTCAGCTTTGAAATTGGCTAAGGAGCCAGCGAAGTTTGTGTTGGAATGTATTGGGA 615
|||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |
Sbjct 524 TTCCTTCAGCTTTGAAATTGGCCAAGGAGCCAGCGAAGTTTGTATTGGATTGTATTGGCA 583
Query 616 AGTTTTACTTACAAGGGCGTAGAGCATTTACGAAAGAGTCGCCTATG-GTCTCTGCGAGA 674
||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 584 AGTTTTACTTACAAGGGCGTAGAGCATTTACTAAAGAGTCGCCTATGAG-CTCTGCGAGA 642
Query 675 CAGGTTTCGCTTCTTATTTTGGAGTCTTTTCTTCTAATGCCTGATCGTGGTAAAGGGAAG 734
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 643 CAAGTTTCGCTTCTTATACTGGAGTCTTTTCTTCTAATGCCTGATCGTGGTAAAGGGAAG 702
Query 735 GTCAAGATTGAGAGTTGTA-TAAAGGATGAGGCGGAGGCGGCTGCTGTTGCGTGGAGGAA 793
|| |||||||||||||| | |||| |||||||||||| ||||||||||||| ||||||||
Sbjct 703 GTGAAGATTGAGAGTTGGATTAAA-GATGAGGCGGAGACGGCTGCTGTTGCTTGGAGGAA 761
Query 794 AAGACTGATGAGC-GAAGGAGGATTAGCTGCGGCAGAGAAAATGGATGCAAGGGGTTTGC 852
||| |||||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 762 AAGGTTGATGA-CTGAAGGAGGATTAGCTGCGGCTGAGAAAATGGATGCAAGGGGTTTGC 820
Query 853 TTTTACTAGTTGCTTGTTTTGGGGTTCCTTCAAACTTAAGGAGTATGGATTTGTTGGATT 912
|||||||||||||||||||||| |||||||||||||| ||||||| |||||| ||||||
Sbjct 821 TTTTACTAGTTGCTTGTTTTGGTGTTCCTTCAAACTTTAGGAGTACAGATTTGCTGGATT 880
Query 913 TGATACGGATGAGTGGTTCGAATGAGATTGCGGGTGCTTTGAAGCGGTCACCCTTTCTTG 972
||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 881 TGATAAGGATGAGTGGTTCGAATGAGATTGCCGGTGCTTTGAAGCGGTCA---------- 930
Query 973 TCCCTATGATTCCAGGTATAGTTGAATCAAGTATCAAGCGTGGAATGCATATTGAAGCTC 1032
| | | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 ---C-A-G-TTTCAGGTATAGTTGAATCAAGTATCAAGCGTGGAATGCATATTGAAGCTC 984
Query 1033 TTGAGATGGTTTATACCTTTGGGATGGAGGATAAGTTTTCAGCTTCTTCT-GTTCTAACT 1091
|||| ||||||||||||||||| ||||||||||||||||||||| || || |||||||||
Sbjct 985 TTGAAATGGTTTATACCTTTGGCATGGAGGATAAGTTTTCAGCTGCT-CTAGTTCTAACT 1043
Query 1092 TCATTCTTAAGGATGAGCAAGGAGTCATTTGAGAGGACAAAACGGAAAGCCCAGTCACCG 1151
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1044 TCATTCTTAAAGATGAGCAAGGAGTCATTTGAGAGGGCAAAACGGAAAGCCCAGTCACCG 1103
Query 1152 CTGGCATTTAAAGAGGCGACTGCAAAGCAGCTAGCTGCGTTATCATCAGTGATGCAGTGT 1211
|||||||||||||| ||| || ||||||||||||||| |||||||||||| |||||||||
Sbjct 1104 CTGGCATTTAAAGAAGCGGCTACAAAGCAGCTAGCTGTGTTATCATCAGTTATGCAGTGT 1163
Query 1212 ATGGAGACTCACAAGTTAGATCCTGCGAAAGAACTACCAGGGTGGCAGATCAAAGAGCAA 1271
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1164 ATGGAGACTCACAAGTTAGATCCTGCGAAAGAACTACCAGGATGGCAGATCAAAGAGCAA 1223
Query 1272 ATTGTTAATTTGGAGAAAGACACTCTTCAGCTCGACAAAGGGATGGAAGAGAAAGCAAGA 1331
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1224 ATTGTTAGCTTGGAGAAAGACACTCTTCAGCTCGACAAAGAGATGGAAGAGAAAGCAAGA 1283
Query 1332 TC-CATCAGTTTAATGGAGGAAGCGGTACTCGCCAAGAGAATGTATAACCAACAGATGAA 1390
|| | ||||||||||||||||||| | ||| |||||||||||||||||||||||||| ||
Sbjct 1284 TCTC-TCAGTTTAATGGAGGAAGCCGCACTTGCCAAGAGAATGTATAACCAACAGATAAA 1342
Query 1391 ACGTCCAAGGTTGTCACCCATGGAGATGCCACCAGTAGCTTCGTCATCATATTCTCCTAT 1450
|||||||||||| ||||||||||| |||||||||||| |||| ||||| |||||||||||
Sbjct 1343 ACGTCCAAGGTTATCACCCATGGAAATGCCACCAGTAACTTCTTCATCGTATTCTCCTAT 1402
Query 1451 CTACCTTGATCGTAGCTTTCATAGTCAGAGAGACGAAGAT-AGAGATGAAATATCAGCTC 1509
||||| |||| | ||||||| |||||| |||||||| || | |||||||||||||||||
Sbjct 1403 CTACCGTGATAGAAGCTTTCCTAGTCAAAGAGACGATGACCA-AGATGAAATATCAGCTC 1461
Query 1510 TTGTGAATAGTTACCTCGGCCCGTCATCATCTTTTCCTCATCGCTCAAGTCTCAGGAGAT 1569
|||||| ||||||||||||||||||| |||||||||||||||||||||| | ||||
Sbjct 1462 TTGTGAGTAGTTACCTCGGCCCGTCAACATCTTTTCCTCATCGCTCAAG----A--AGAT 1515
Query 1570 CCCCTGAATATATGGTTCCACTTCCACCTGGTGGGTTAGGAAGAAGCGTATATGCATATG 1629
|||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1516 CCCCGGAATATATGGTTCCACTTCCACATGGTGGGTTAGGAAGAAGTGTATATGCATATG 1575
Query 1630 AACATCTA-CCTCCAAATTCATACTCTCCGGGTCACGGACAGAGACATCCA-CGACAGTA 1687
||||||| || ||||||||||| ||||| ||||||||||| |||| || | ||||||||
Sbjct 1576 AACATCTGGCC-CCAAATTCATATTCTCCAGGTCACGGACATAGACTTC-ATCGACAGTA 1633
Query 1688 CTCTCC 1693
||||||
Sbjct 1634 CTCTCC 1639
Score = 289 bits (156), Expect = 8e-77
Identities = 176/186 (95%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 1661 TCACGGACAGAGACATCCACGACAGTACTCTCCTCCAGTTCATGGACAACAACAAATACC 1720
|||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||
Sbjct 1649 TCACGGACAGAGACATCCACTACAGTACTCTCCTCCAATTCATGGACAACAACAGTTACC 1708
Query 1721 ATTTGGTCTACAAAGAGTTTACAGACATTCACCATCTGAAGAAAGATATTTGGGTTTATC 1780
|| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1709 ATATGGTATACAAAGGGTTTACAGACATTCACCATCTGAAGAAAGATATTTGGGTTTATC 1768
Query 1781 CAATCACAGGTCTCCTCGTAGTAACTCATCACTAGACCCCAAATAGGAGGAATGTAAATT 1840
|||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1769 CAATCAAAGGTCTCCTCGCAGTAACTCATCATTAGACCCCAAATAGGAGGAATGTAAATT 1828
Query 1841 TGTAAC 1846
||||||
Sbjct 1829 TGTAAC 1834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91364991900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5