BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949656 Length=959 Score E Sequences producing significant alignments: (Bits) Value AT5G51100.1 | Symbols: FSD2 | Fe superoxide dismutase 2 | chr5:... 1445 0.0 AT4G00651.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 309 3e-83 > AT5G51100.1 | Symbols: FSD2 | Fe superoxide dismutase 2 | chr5:20773296-20775701 REVERSE LENGTH=1045 Length=1045 Score = 1445 bits (782), Expect = 0.0 Identities = 903/962 (94%), Gaps = 6/962 (1%) Strand=Plus/Plus Query 1 TCAGTAACGCTTTGAG-GAAAGATGACGAGTGTTGCAGTGACAGCAATTTCCTCATCTCT 59 |||||||||||||||| | ||||||| || ||||||||||||||| | | |||| ||||| Sbjct 46 TCAGTAACGCTTTGAGTG-AAGATGATGAATGTTGCAGTGACAGCCACTCCCTCGTCTCT 104 Query 60 CTCGTGCTCTCCTCTGCTGCTTCCTTCTCAAGGGCCAAAACTGCGAATGCAATGGAAAAG 119 || || |||||||||||| |||||||||||||||||||| | |||||||||||||||||| Sbjct 105 CTTGTACTCTCCTCTGCTTCTTCCTTCTCAAGGGCCAAACCGGCGAATGCAATGGAAAAG 164 Query 120 AAAC-GATAAGAGACAGTTCTCGAGAAAGGTGGCTGTTTCCGGTGTAATCACTGCGGGGT 178 |||| || ||||||| ||| || ||||||||||||||||||||| ||||| || || | Sbjct 165 AAACGGA-AAGAGACGGTTAGGGACAAAGGTGGCTGTTTCCGGTGTTATCACAGCTGGAT 223 Query 179 TTGAGCTGAAGCCGCCTCCTTATCCTCTTGATGCTCTGGAACCGCATATGAGCCGGGAAA 238 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 224 TTGAGCTGAAGCCACCTCCATATCCTCTTGATGCTCTGGAACCGCATATGAGCCGGGAAA 283 Query 239 CCTTGGATTATCACTGGGGCAAACATCACAGAACTTACGTAGAGAATCTGAACAAGCAAA 298 |||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||| Sbjct 284 CCTTGGATTATCACTGGGGCAAACATCACAAAACTTATGTAGAGAACCTGAACAAGCAAA 343 Query 299 TCGTAGGCACAGATCTAGATATACTGCCCTTAGAAGAAGTTGTGCTTCTTTCATACAACA 358 || ||||||| ||||||||| | | |||| |||||||||||||||||||||||||||| Sbjct 344 TCTTAGGCACGGATCTAGATGCATTATCCTTGGAAGAAGTTGTGCTTCTTTCATACAACA 403 Query 359 GAGGCAATATGCTTCCTGCCTTCAACAACGCAGCACAGGCTTGGAACCACGACTTCTTCT 418 |||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| Sbjct 404 AAGGCAATATGCTTCCTGCTTTCAACAACGCTGCACAGGCTTGGAACCACGAGTTCTTCT 463 Query 419 GGGAGTCTATCCAACCTGGAGGTGGAGGAAAGCCAACTGGAGAGCTCCTCAGATTAATAG 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 464 GGGAGTCTATCCAACCTGGAGGTGGAGGAAAGCCAACTGGAGAGCTCCTCAGATTAATAG 523 Query 479 AGAGAGATTTCGGATCTTTCGAAGAGTTTTTGGAAAGGTTCAAGTCGGCTGCAGCTTCTA 538 | |||||||| || |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 524 AAAGAGATTTTGGGTCTTTCGAAGAGTTTTTGGAAAGGTTCAAGTCGGCTGCAGCTTCGA 583 Query 539 ATTTTGGTTCGGGTTGGACATGGCTTGCATATAAGGCGAATAGACTTGACGTTGCAAATG 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 584 ATTTTGGTTCGGGTTGGACATGGCTTGCATATAAGGCGAATAGACTTGACGTTGCAAATG 643 Query 599 CCGTAAATCCACTCCCAAAGGAGGAAGACAAGAAGCTTGTAATAGTGAAGACGCCCAATG 658 |||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 644 CCGTTAATCCTCTCCCAAAGGAGGAAGACAAGAAACTTGTTATAGTGAAGACGCCCAATG 703 Query 659 CAGTAAATCCGCTTGTATGGGATTATTCTCCACTTCTCACCATTGATACCTGGGAGCACG 718 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 704 CAGTAAATCCGCTCGTATGGGATTATTCTCCACTTCTCACCATTGATACCTGGGAGCACG 763 Query 719 CTTACTATCTGGATTTTGAGAACCGAAGAGCTGAATACATAAATACATTCATGGAAAGGC 778 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 764 CTTACTATCTGGATTTTGAGAACCGAAGAGCTGAATACATAAATACATTCATGGAAAAGC 823 Query 779 TTGTATCATGGGAAACTGTAAGCACAAGGTTGGAATCCGCAATGGCTCGAGCAGTGCAAA 838 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 824 TTGTGTCATGGGAAACTGTAAGCACAAGGTTGGAATCCGCAATTGCTCGAGCAGTGCAAA 883 Query 839 GAGAACAAGAAGGAACAGAGACAGAGGATGAAGAGAATCCAGATGACGAAG-AGCCAGAG 897 ||||||||||||||||||||||||| |||||||||||||||||||| |||| | |||||| Sbjct 884 GAGAACAAGAAGGAACAGAGACAGAAGATGAAGAGAATCCAGATGATGAAGTA-CCAGAG 942 Query 898 GTCTATTTAGATAGTGATATCGATGTATCTGAGGTTGACTAAAACTTGTGAAGTAATAAC 957 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 943 GTCTATTTAGATAGTGACATCGATGTATCTGAGGTTGACTAAAACTTGTGAAGCAATAAC 1002 Query 958 AT 959 || Sbjct 1003 AT 1004 > AT4G00651.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1); Has 34 Blast hits to 34 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:271487-271879 REVERSE LENGTH=288 Length=288 Score = 309 bits (167), Expect = 3e-83 Identities = 179/185 (97%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 755 ACATAAATACATTCATGGAAAGGCTTGTATCATGGGAAACTGTAAGCACAAGGTTGGAAT 814 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 104 ACATAAATACATTCATGGAAAAGCTTGTGTCATGGGAAACTGTAAGCACAAGGTTGGAAT 163 Query 815 CCGCAATGGCTCGAGCAGTGCAAAGAGAACAAGAAGGAACAGAGACAGAGGATGAAGAGA 874 ||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 164 CCGCAATTGCTCGAGCAGTGCAACGAGAACAAGAAGGAACAGAGACAGAAGATGAAGAGA 223 Query 875 ATCCAGATGACGAAGAGCCAGAGGTCTATTTAGATAGTGATATCGATGTATCTGAGGTTG 934 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 224 ATCCAGATGACCAAGAGCCAGAGGTCTATTTAGATAGTGATATCGATGTATCTGAGGTTG 283 Query 935 ACTAA 939 ||||| Sbjct 284 ACTAA 288 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46918693298 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5