BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949656
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51100.1 | Symbols: FSD2 | Fe superoxide dismutase 2 | chr5:... 1445 0.0
AT4G00651.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 309 3e-83
> AT5G51100.1 | Symbols: FSD2 | Fe superoxide dismutase 2 | chr5:20773296-20775701
REVERSE LENGTH=1045
Length=1045
Score = 1445 bits (782), Expect = 0.0
Identities = 903/962 (94%), Gaps = 6/962 (1%)
Strand=Plus/Plus
Query 1 TCAGTAACGCTTTGAG-GAAAGATGACGAGTGTTGCAGTGACAGCAATTTCCTCATCTCT 59
|||||||||||||||| | ||||||| || ||||||||||||||| | | |||| |||||
Sbjct 46 TCAGTAACGCTTTGAGTG-AAGATGATGAATGTTGCAGTGACAGCCACTCCCTCGTCTCT 104
Query 60 CTCGTGCTCTCCTCTGCTGCTTCCTTCTCAAGGGCCAAAACTGCGAATGCAATGGAAAAG 119
|| || |||||||||||| |||||||||||||||||||| | ||||||||||||||||||
Sbjct 105 CTTGTACTCTCCTCTGCTTCTTCCTTCTCAAGGGCCAAACCGGCGAATGCAATGGAAAAG 164
Query 120 AAAC-GATAAGAGACAGTTCTCGAGAAAGGTGGCTGTTTCCGGTGTAATCACTGCGGGGT 178
|||| || ||||||| ||| || ||||||||||||||||||||| ||||| || || |
Sbjct 165 AAACGGA-AAGAGACGGTTAGGGACAAAGGTGGCTGTTTCCGGTGTTATCACAGCTGGAT 223
Query 179 TTGAGCTGAAGCCGCCTCCTTATCCTCTTGATGCTCTGGAACCGCATATGAGCCGGGAAA 238
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 224 TTGAGCTGAAGCCACCTCCATATCCTCTTGATGCTCTGGAACCGCATATGAGCCGGGAAA 283
Query 239 CCTTGGATTATCACTGGGGCAAACATCACAGAACTTACGTAGAGAATCTGAACAAGCAAA 298
|||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||
Sbjct 284 CCTTGGATTATCACTGGGGCAAACATCACAAAACTTATGTAGAGAACCTGAACAAGCAAA 343
Query 299 TCGTAGGCACAGATCTAGATATACTGCCCTTAGAAGAAGTTGTGCTTCTTTCATACAACA 358
|| ||||||| ||||||||| | | |||| ||||||||||||||||||||||||||||
Sbjct 344 TCTTAGGCACGGATCTAGATGCATTATCCTTGGAAGAAGTTGTGCTTCTTTCATACAACA 403
Query 359 GAGGCAATATGCTTCCTGCCTTCAACAACGCAGCACAGGCTTGGAACCACGACTTCTTCT 418
|||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 404 AAGGCAATATGCTTCCTGCTTTCAACAACGCTGCACAGGCTTGGAACCACGAGTTCTTCT 463
Query 419 GGGAGTCTATCCAACCTGGAGGTGGAGGAAAGCCAACTGGAGAGCTCCTCAGATTAATAG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 GGGAGTCTATCCAACCTGGAGGTGGAGGAAAGCCAACTGGAGAGCTCCTCAGATTAATAG 523
Query 479 AGAGAGATTTCGGATCTTTCGAAGAGTTTTTGGAAAGGTTCAAGTCGGCTGCAGCTTCTA 538
| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 524 AAAGAGATTTTGGGTCTTTCGAAGAGTTTTTGGAAAGGTTCAAGTCGGCTGCAGCTTCGA 583
Query 539 ATTTTGGTTCGGGTTGGACATGGCTTGCATATAAGGCGAATAGACTTGACGTTGCAAATG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 ATTTTGGTTCGGGTTGGACATGGCTTGCATATAAGGCGAATAGACTTGACGTTGCAAATG 643
Query 599 CCGTAAATCCACTCCCAAAGGAGGAAGACAAGAAGCTTGTAATAGTGAAGACGCCCAATG 658
|||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 644 CCGTTAATCCTCTCCCAAAGGAGGAAGACAAGAAACTTGTTATAGTGAAGACGCCCAATG 703
Query 659 CAGTAAATCCGCTTGTATGGGATTATTCTCCACTTCTCACCATTGATACCTGGGAGCACG 718
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 CAGTAAATCCGCTCGTATGGGATTATTCTCCACTTCTCACCATTGATACCTGGGAGCACG 763
Query 719 CTTACTATCTGGATTTTGAGAACCGAAGAGCTGAATACATAAATACATTCATGGAAAGGC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 764 CTTACTATCTGGATTTTGAGAACCGAAGAGCTGAATACATAAATACATTCATGGAAAAGC 823
Query 779 TTGTATCATGGGAAACTGTAAGCACAAGGTTGGAATCCGCAATGGCTCGAGCAGTGCAAA 838
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 824 TTGTGTCATGGGAAACTGTAAGCACAAGGTTGGAATCCGCAATTGCTCGAGCAGTGCAAA 883
Query 839 GAGAACAAGAAGGAACAGAGACAGAGGATGAAGAGAATCCAGATGACGAAG-AGCCAGAG 897
||||||||||||||||||||||||| |||||||||||||||||||| |||| | ||||||
Sbjct 884 GAGAACAAGAAGGAACAGAGACAGAAGATGAAGAGAATCCAGATGATGAAGTA-CCAGAG 942
Query 898 GTCTATTTAGATAGTGATATCGATGTATCTGAGGTTGACTAAAACTTGTGAAGTAATAAC 957
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 943 GTCTATTTAGATAGTGACATCGATGTATCTGAGGTTGACTAAAACTTGTGAAGCAATAAC 1002
Query 958 AT 959
||
Sbjct 1003 AT 1004
> AT4G00651.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein match
is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1); Has 34 Blast
hits to 34 proteins in 11 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr4:271487-271879 REVERSE
LENGTH=288
Length=288
Score = 309 bits (167), Expect = 3e-83
Identities = 179/185 (97%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 755 ACATAAATACATTCATGGAAAGGCTTGTATCATGGGAAACTGTAAGCACAAGGTTGGAAT 814
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 104 ACATAAATACATTCATGGAAAAGCTTGTGTCATGGGAAACTGTAAGCACAAGGTTGGAAT 163
Query 815 CCGCAATGGCTCGAGCAGTGCAAAGAGAACAAGAAGGAACAGAGACAGAGGATGAAGAGA 874
||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 164 CCGCAATTGCTCGAGCAGTGCAACGAGAACAAGAAGGAACAGAGACAGAAGATGAAGAGA 223
Query 875 ATCCAGATGACGAAGAGCCAGAGGTCTATTTAGATAGTGATATCGATGTATCTGAGGTTG 934
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 ATCCAGATGACCAAGAGCCAGAGGTCTATTTAGATAGTGATATCGATGTATCTGAGGTTG 283
Query 935 ACTAA 939
|||||
Sbjct 284 ACTAA 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46918693298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5