BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949658
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51120.2 | Symbols: PABN1 | polyadenylate-binding protein 1 ... 686 0.0
> AT5G51120.2 | Symbols: PABN1 | polyadenylate-binding protein
1 | chr5:20779661-20781557 FORWARD LENGTH=1213
Length=1213
Score = 686 bits (371), Expect = 0.0
Identities = 415/436 (95%), Gaps = 4/436 (1%)
Strand=Plus/Plus
Query 297 GTGGTGTTAGTGCGGCTGAGAAGGAAGAAGTGGATTCGCGTTCAATATATGTCGGCAATG 356
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 482 GTGGTGTTAGTGCGGCTGAGAAGGAAGAAGTGGATTCGCGTTCAATATATGTTGGCAATG 541
Query 357 TGGATTATGCATGTACTCCAGAGGAAGTCCAGCAGCATTTTCAATCCTGTGGGACAGTGA 416
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 542 TGGACTATGCATGTACTCCAGAGGAAGTCCAGCAGCATTTTCAATCATGTGGGACAGTGA 601
Query 417 ATAGGGTTACGATTTTGACAGATAAGTTTGGTCAACCTAAAGGTTTTGCCTATGTCGAAT 476
|||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 602 ATAGGGTTACAATTCTGACAGATAAGTTTGGTCAACCTAAAGGTTTTGCGTATGTCGAAT 661
Query 477 TTGTGGAAGTAGAAGCTGTTCAGAATTCTCTAATTTTGAACGAGTCAGAACTTCATGGTC 536
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 662 TTGTGGAAGTAGAAGCTGTTCAGAATTCGCTTATTTTGAACGAGTCAGAACTACATGGTC 721
Query 537 GTCAGATAAAGGTATCTGCAAAGAGAACTAATGTCCCCGGAATGAGGCAATTTCGAGG-A 595
||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |
Sbjct 722 GTCAGATAAAGGTATCTGCAAAGAGGACTAATGTACCTGGAATGAGGCAATTTCGAGGAA 781
Query 596 -A-GGCGCCCCTTTAGACCAATGAGGGGATTCATGCCCGGAGTTCCATTTTATCCTCCAT 653
| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 782 GAGGGCGTCCCTTTAGACCGATGAGGGGATTCATGCCAGGAGTTCCATTTTATCCTCCAT 841
Query 654 ATGCTTATGGGAGAGTTCCCAGGTTCAGACGGCCGATGCGCTACAGACCGTACTGATTAG 713
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 842 ATGCTTATGGGAGAGTTCCCAGGTTCAGACGGCCTATGCGCTACAGACCGTACTGATTAG 901
Query 714 GCAAAATTGTTGTTAA 729
||||| ||| ||||||
Sbjct 902 GCAAA-TTGGTGTTAA 916
Score = 407 bits (220), Expect = 8e-113
Identities = 265/286 (93%), Gaps = 6/286 (2%)
Strand=Plus/Plus
Query 2 gagagagagggagagagagagaTGCCGGTGCGCGAGGAGCAAGAGCATGAGGTGTACGGT 61
|||||| | |||||||| |||||||||||| ||| ||||||||||||||||||||||||
Sbjct 79 GAGAGATATAGAGAGAGAAAGATGCCGGTGCACGATGAGCAAGAGCATGAGGTGTACGGT 138
Query 62 ggagagatctcagaggaagaggaagaagaaggagagatggatacggaggagtacgaagaa 121
||||||||| | | ||||| | |||||||| |||||||||||||| ||||||||||||
Sbjct 139 GGAGAGATC-C-CA-GAAGA-G--GAAGAAGGTGAGATGGATACGGAAGAGTACGAAGAA 192
Query 122 cacggcggagaagaaggCGCCGCCGCCGGAGATGAGGAGCTTGAACCTGGCTCTAGCTCT 181
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 CACGGCGGAGAAGAAGGTGCCGCCGCCGGAGATGAGGAGCTTGAACCTGGCTCTAGCTCT 252
Query 182 AAGGACTTAGAGGATATGAAGAAACGAATTAAGGAGATCGAGGAAGAAGCTGGAGCTTTG 241
| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 253 AGGGACTTGGAGGATATGAAGAAACGAATTAAGGAGATTGAGGAAGAAGCTGGAGCTTTG 312
Query 242 CGTGAAATGCAAGCCAAAGCTGAGAAAGATATGGGTGCTGGTCAAG 287
||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 313 CGTGAAATGCAAGCCAAGGCTGAGAAAGATATGGGTGCTAGTCAAG 358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5