BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949660
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51140.2 | Symbols: | Pseudouridine synthase family protein... 1840 0.0
> AT5G51140.2 | Symbols: | Pseudouridine synthase family protein
| chr5:20784082-20786816 REVERSE LENGTH=1277
Length=1277
Score = 1840 bits (996), Expect = 0.0
Identities = 1121/1180 (95%), Gaps = 13/1180 (1%)
Strand=Plus/Plus
Query 4 AAGATTTAATCTTAAAAACATGAAACGAAAGCAGC----A-A-G--AA-GACGACGGCGT 54
|||| |||||| ||||||||||||||||||||||| | | | || |||||||||||
Sbjct 7 AAGA-TTAATC-TAAAAACATGAAACGAAAGCAGCAAGAAGACGACAACGACGACGGCGT 64
Query 55 AGAGAAAGCCGCCTCTCCCGTCGTCGCCACCACCCCAAACACCATGAATACTGACCTACT 114
||||||||||| |||||||||| ||||||| ||| |||||||||||| |||||| |||||
Sbjct 65 AGAGAAAGCCGTCTCTCCCGTCCTCGCCACTACCTCAAACACCATGAGTACTGATCTACT 124
Query 115 TCTACAGTCACCTTCCAAACTATCGCAGAAGCAGGACTACATCTTCCATGGAGGAAGACG 174
| |||||||| |||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 125 TTTACAGTCATCTTCTAAACTATCACAGAAACAGGACTACATCTTCCATGGAGGAAGACG 184
Query 175 CCATGTGAGGCCGTACTACTTCGAGTTCATTTCTCATGTGAACAAACGCTGGACAGGGAA 234
||||||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 185 CCATGTGAGACCTTACTACTTCGAGTTCATTTCTCATGTGAACAAACGATGGACTGGGAA 244
Query 235 AACAATTGTCGATTTGTTCGCCGACGAATTTAAAGGACGGCCTCGTGAATATTATGTTGG 294
||||||||| |||||||| || || ||||||||||||||||||||||| |||||||||||
Sbjct 245 AACAATTGTGGATTTGTTTGCTGATGAATTTAAAGGACGGCCTCGTGATTATTATGTTGG 304
Query 295 TGCAGTCAAATCTGGAAGAATCAAAGTTGATGGAGAAATTGTACCAGTTTCATACGTTGT 354
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 305 TGCAGTCAAATCTGGAAGAATCAAAGTTGATGGAGAAATTGTACCGGTTTCATACATTGT 364
Query 355 GAAATCATCTCAGAAGATTACTCACTTCCTCCACAGGCATGAACCACCGGTGATGATTGA 414
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 GAAATCATCCCAAAAGATTACTCACTTCCTCCACAGGCATGAACCACCGGTGATGATTGA 424
Query 415 TGATGTAGTGATCCTTCATCAAGAACCTGACGTTGTTACTGTCTGCAAACCAGCTTCTGT 474
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 TGATGTTGTGATCCTTCATCAAGAACCTGACGTTGTTACTGTCTGCAAACCAGCTTCTGT 484
Query 475 TCCTGTGCATCCATGTGGTCAATATCGTAAGAACACAG-TTGTTGGCATCCTTGATGCTG 533
|||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct 485 TCCTGTGCATCCATGTGGTCAATACCGTAAGAACAC-GATTGTTGGCATCCTTGATGCTG 543
Query 534 AGCATGACCTAGGAACTCTATTTCCTATTCACAGATTAGACCGTTTGGTTTCTGGATTGC 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 AGCATGACCTAGGAACTCTATTTCCTATTCACAGATTAGACCGTTTGGTTTCTGGATTGC 603
Query 594 TCATCATAGCAAGAACTGCAACAAAAGCTGATTTTTTCAGGCAACAGATTGAGGGTGGAA 653
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 604 TTATCATAGCAAGAACTGCGGCAAAAGCTGATTTTTTCAGGCAACAGATTGAGGGTGGAA 663
Query 654 TGGTGAAGAAACGTTATATTGCAAAGGTTATTGGTGTGTTCCCAGAAGATGAGATGATAG 713
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 664 TGGTGAAGAAACGTTATATTGCAAAGGTTATTGGCGTGTTCCCAGAAGATGAGATGATAG 723
Query 714 TTGACGCCAACATAAATTATAATGGCAGCGAAGGAAGAAGTACAGCAGAGGACCCCGATT 773
| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 724 TCGACGCCAACATAAATTATAATGGCAGCGAAGGAAGAAGTACAGCAGAGGACGCCAATT 783
Query 774 CAAGTGGTGATGATAAGAAGGTGAAGGGGAAGCCTGCATGTACCAAGTTCACTAGAATCG 833
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 784 CAAGTGGTGACGATAAGAAGGTGAAGGGGAAGCCTGCATGCACGAAGTTCACTAGAATCG 843
Query 834 ATACAAATGGGACTCATAGCCTCGTCTCATGTGAACCAGTGACTGGGCGAACCCATCAAA 893
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 844 ATACAAATGGGACTCATAGCCTCGTCTCATGTGAACCAGTGACAGGGCGAACCCATCAAA 903
Query 894 TACGAGTGCATCTACAATATACAGGGCATCCCATAGCGAATGACCCTCTTTATCTCAATC 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TACGAGTGCATCTACAATATACAGGGCATCCCATAGCGAATGACCCTCTTTATCTCAATC 963
Query 954 AACACATAGATAATCTTGAGACCTATATTGCAAAAAGAATCGATGCAGGTGAGAGAAAGA 1013
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 964 AACACATAGATAATCTTGAGACCTACATTGCAAAAAGAATCGATGCGGGTGAGAGAAAGA 1023
Query 1014 TTGTCTCCCCAGATGACTACGTGTATTCAAGCGAAGATTTCAGCATCGATCCAATGTGTA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 TTGTCTCCCCAGATGACTACGTGTATTCAAGCGAAGATTTCAGCATCGATCCAATGTGTA 1083
Query 1074 CAAACTGCCCGAAGTTGATCCCACAAGGATATGAGGAGCACGACGAGGCTCTCTGGTTAC 1133
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1084 CGAACTGCCCAAAGTTGATCCCACAAGGATATGAGGAGCATGACGAGGCTCTCTGGTTAC 1143
Query 1134 ACTGCGTTCAATATTCTGGAACTGGATGGGTATACGAATG 1173
| ||||||||||| | |||||||||||||| |||||||||
Sbjct 1144 ATTGCGTTCAATACTGTGGAACTGGATGGGAATACGAATG 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60090052365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5