BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949661
Length=1637
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51150.1 | Symbols: | Mitochondrial import inner membrane t... 2660 0.0
> AT5G51150.1 | Symbols: | Mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein | chr5:20788984-20791808
FORWARD LENGTH=1959
Length=1959
Score = 2660 bits (1440), Expect = 0.0
Identities = 1575/1641 (96%), Gaps = 6/1641 (0%)
Strand=Plus/Plus
Query 3 AATTCCTTTTAATTCACGATGCCTTCTTCGTTCTCCAAGCCGGCTTTAGATCCTTCTTCA 62
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 33 AATTCCTTTTAATTGACGATGCCTTCTTCGTTCTCCAAGCCGGATTTAGATCCTTCTTCT 92
Query 63 TCGCCTCCACCGATTTCTCCTTTATCTCAAGACAGCTCGGAGGCTGAGCGCCGGCTTCGG 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 TCGCCTCCACCGATTTCTCCTTTATCTCAAGACAGCTCGGAGGCTGAGCGCCGGCTTCGA 152
Query 123 GAAGCGGAGGAGAGGCTACGCGATGCTATGGCGGAGCTTCAACGTAGACAACGCTCCGCG 182
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 153 GAAGCGGAGGAGAGGCTACGCGATGCCATGGCGGAGCTTCAGCGTAGACAACGCTCTGCG 212
Query 183 GCGCGTGGATCTCACGCCGAATTGTGTGATCACGCTGACGTTTCTTGCGTCGCCAATGCC 242
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 GCGCGTGGATCTCACGCGGAATTGTGTGATCACGCTGACGTTTCTTGCGTCGCCAATGCC 272
Query 243 ATCGGGAATTTATGTCAGAGCTTTCTTCTCTCTTATGGTGTTAGAGTTGGGATCGGGATT 302
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 ATTGGGAATTTATGTCAGAGCTTTCTTCTCTCTTATGGTGTTAGAGTTGGGATCGGGATT 332
Query 303 CTTCTTCGCGCTTTTAAGCTCGCTAGGGGACAGTCTTATTCGTCTCTTCTCGATCTGAAG 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 333 CTTCTTCGCGCTTTTAAGCTCGCTAGGGGACAGTCTTATTCGTCTCTTCTCGATCTTAAG 392
Query 363 CAACTTGTCTCGGAGAAAGATTTGATAGTTAGGGAAGAAGCATGTCGTATTGGCCTACTA 422
|||||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 393 CAACTTGTTTCAGAGAAAGATTTGATAGTTAGGGAGGAAGCATGTCGTATTGGTCTACTT 452
Query 423 TTTGGTGGCTTTACAGGCTCGTATCATGCCCTTAGATGCTGCTTGAGGAAGTGGAGGAAG 482
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 453 TTTGGTGGCTTTACTGGCTCGTATCATGCCCTTAGATGCTGTTTGAGGAAGTGGAGAAAG 512
Query 483 AAGGAAACGCCATTGAATTCAGTCTTAGCAGGTTCAGTTGCGGGTTTGTCTATCATGGCT 542
|| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 513 AAAGAGACGCCATTGAATTCAGTCTTAGCAGGTTCAGTTGCGGGTTTGTCTATCTTGGCT 572
Query 543 TTAGATGATTCCAACCAGCGGCGCACACTTGCTCTATACCTCTTGGCTAGATTAGGCCAG 602
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 573 TTAGATGATTCCAACCAGCGTCGCACACTTGCTCTATACCTCTTGGCTAGATTAGGCCAG 632
Query 603 GCGGCTTATAATTCCGCAAAGTCAAAGAACAAGTTCCATCTTTGGGGTAGCCATTGGAGA 662
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 GCGGCTTATAATTCCGCTAAGTCAAAGAACAAGTTCCATCTTTGGGGTAGCCATTGGAGA 692
Query 663 CATGGAGATTCATTACTTTTTTCTCTTGCATGTGCTCAGGTTATGTATTCCTTTATAATG 722
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 CATGGAGATTCGTTACTTTTTTCTCTTGCATGTGCTCAGGTTATGTATTCCTTTATAATG 752
Query 723 CGTCCTGAAACCTTGCCAAAATCATATAGAGAATTTATTCAGAAAACTGGTCCTGTTGCA 782
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 753 CGTCCTGAAACCTTGCCAAAATCATATAGAGAATTTATTCAGAAGACTGGTCCAGTTGCA 812
Query 783 AGGCCTGTCTACCAGGCTGTAAGAGAATGCTGCAGAGGTGGTCCAATTGATGTAGCCTCC 842
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 813 AGGCCTGTCTACCAAGCTGTAAGAGAGTGCTGCAGAGGTGGTCCAATTGATGTAGCCTCC 872
Query 843 TTATCAGCCTATATTTCTAGTAAAAACGAAGCTAGTGACGTGAAGGTGGAAGAGTTTGCT 902
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 873 TTGTCAGCCTATATTTCTAGTAAAAACGAAGCAAGCGACGTGAAGGTGGAAGAGTTTGCT 932
Query 903 TCCATCATTCCTTGTTCAGCTATTCATCCAAACACTAACTCGTGTCTGGCCCAAAATGCT 962
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 TCCATCATTCCCTGTGCAGCTATTCATCCAAACACTAACTCGTGTCTGGCCCAAAATGCT 992
Query 963 AACGCAATGTCAGCTACATTCAAGAAAACATTTCCATTATATTTCTCCCTGACATTTGTC 1022
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 993 AATGCAATGTCAGCTACATTCAAGAAAACATTTCCATTATATTTCTCCCTGACTTTTGTC 1052
Query 1023 CCATATGTTGTTCTACACCTACAAAAGTTCATGGCTTCTCCTTACCGGACATCTTGGCTT 1082
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1053 CCATATGTTGTTCTACACCTACAAAAATTCATGGCTTCTCCTTACCGGACATCTTGGCTT 1112
Query 1083 GCAATCAGAGATTCTGTTAGATCGACGTCCTTCTTGTCTGCTTTTGTTGGGATTTTTCAG 1142
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 GCAATCAGAGATTCAGTTAGATCGACGTCCTTCTTGTCTGCTTTTGTTGGGATTTTTCAG 1172
Query 1143 GCTTTCATATGTGCCCATAGAAAAGTTGCAACCAAGGACCACAAGCTCGTTTATTGGTTT 1202
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1173 GCTTTCATATGTGCCCATAGAAAAGTTGCAACCAAAGACCACAAGCTCGTTTATTGGTTT 1232
Query 1203 GCGGGTGGTGTAGCAGCCCTCTCAGTTATGCTGGAGAAAAAACCGAGACGATCTGAGCTT 1262
|||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1233 GCGGGTGGTGCAGCAGCCCTCTCAGTTATGCTGGAGAAGAAACCGAGACGCTCTGAGCTT 1292
Query 1263 GCTCTATATGTTCTTCCTCGAGCAGGAGATTCTCTGTGGGAGATACTTATTAATCGCCAC 1322
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1293 GCTCTATATGTTCTTCCCCGAGCAGGAGATTCTCTGTGGGAGATACTTGTTAATCGCCAC 1352
Query 1323 CTTCTTCCCGATATTAAAAATGCTGAGGTTGCTTTATTTTGTGGATGTATGGGAGGAATC 1382
||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 1353 CTTCTTCCCGACATTAAAAATGCTGAGGTGGCTTTATTCTGTGGATGCATGGGAGGAATA 1412
Query 1383 ATGTACTACCTAGAATATGAACCTGATACGATGGCTCCATTTCTGAGGGGACTCATCCGT 1442
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1413 ATGTACTACCTCGAATATGAACCTGATACAATGGCTCCGTTTCTGAGGGGACTCATCCGT 1472
Query 1443 CGGTTTCTTGCTAGTCAAATAAGCAATCCTAGCAGCAAATACCCTCATAATTCTTCCTAT 1502
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1473 CGGTTTCTTGCTAGCCAAATAAGCAATCCTAGCAGCAAATACCCTCATAGTTCGTCCTAT 1532
Query 1503 ACATATCTCCAGACTCTAGATGCATTGAAGAAACCAAAAACGCAGGAGAGCCGAGAAGGC 1562
| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1533 TCTTATCTCCAGACCCTAGATGCATTGAAGAAACCGAAAACGCAGGAGAGCCGAGAAGGC 1592
Query 1563 GAAACTCCGAAAGCAGAAGAAAAGTATAACTTGGAAGCAATTCCTGGTCTTTAGAAG--- 1619
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1593 GAAACTCCGAAAGCCGAAGAAAAGTATAACTTGGAAGCAATTCCCGGTCTTTAGAAGTAT 1652
Query 1620 ---CAGAAGCTGTCTGATACT 1637
||||||||||||||||||
Sbjct 1653 AAGCAGAAGCTGTCTGATACT 1673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80873077995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5