BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949667
Length=886
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51220.1 | Symbols: | ubiquinol-cytochrome C chaperone fami... 1459 0.0
> AT5G51220.1 | Symbols: | ubiquinol-cytochrome C chaperone family
protein | chr5:20821215-20823266 REVERSE LENGTH=1177
Length=1177
Score = 1459 bits (790), Expect = 0.0
Identities = 854/886 (96%), Gaps = 0/886 (0%)
Strand=Plus/Plus
Query 1 ACCACAAGGGTTTCTCTCAAATGTTGCCCAGATTAGCTCGAGTCGTCACTCAAACCTCAA 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 122 ACCACAAGGGTTTCTCTCTAATGTTGCCCAGATTAGCTCGAGTCGTCACTCAAACCTCAA 181
Query 61 AGCTTCGATCTTTGACCTCAAATGGATCGATGAAAAATCTCTCCTTTTTCTCCCGCTATG 120
||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 182 AGCTTCGATCTTTGACCACTAATGGATCGATGAAAAATCTCTCCTTTTTCTCCCGATATG 241
Query 121 GGTACGCGACTGTTGCACCTGCGGCGGCTGATCCTCCGCCGAAGAAGGATTTCCCTAGTA 180
|||||||||||||||| || ||||| |||||||||||| || ||||||||||||| ||||
Sbjct 242 GGTACGCGACTGTTGCGCCGGCGGCAGCTGATCCTCCGTCGCAGAAGGATTTCCCCAGTA 301
Query 181 AATCTCCGATAAACTTGGATAACATGTTTTGGTCAAAGCCATGTTCATTGGCTCTGCCTA 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 302 AATCTCCGATAAACTTGGATAAGATGTTTTGGTCAAAGCCATGTTCATTGGCTCTGCCTA 361
Query 241 AAGACTCTCCTCTCAGAATTGATGAACCAGACTATGTAGGGATTCGTCTTTTCATACTAA 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 362 AAGACTCTCCTCTCAGAATTGATGAACCAGACTATGTAGGGATTCGTCGTTTCATACTAA 421
Query 301 AGATGATGATGTTCTATAGCAAACAGAGCATGTCTATCCGTGGAGCAAACGTGATCTACA 360
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 422 AGATGATGATGTTCTATAGCAAACAGAGCATGTCTATCCGTGGGGCTAACGTGATCTACA 481
Query 361 AGCGGATCATTGCACAAGTCGACAAACCAGCAATCTATGATGTTTTCAACTTGGAGAAAA 420
||||||||||||||||||| || ||||| ||||| |||||||| ||||||||||||||||
Sbjct 482 AGCGGATCATTGCACAAGTTGATAAACCTGCAATATATGATGTATTCAACTTGGAGAAAA 541
Query 421 CATTCAAAATAACATTTTCGCTGCTTGTCCTTCATATGTGGCTTGTTCTACGCCGCTTGA 480
||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 542 CATTCAAAATAACGTATTCGCTGCTTGTCCTTCATATGTGGCTTGTTTTACGCCGCTTGA 601
Query 481 AGGAAGATGGACAGGAAGGTGTTGACCTTGGTCAATATGTCTATGAGATCTACAATCATG 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 602 AGGAAGATGGACAGGAAGGTGTTGACCTTGGTCAATACGTCTATGAGATCTACAATCATG 661
Query 541 ATGTGGAACTCAGGGTATCTAAAGCCGGGGTTAACTTGCTGCTGGCCAAGTGGATGAAGG 600
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 662 ATGTTGAACTCAGGGTATCTAAAGCCGGGGTTAACTTGCTGCTAGCCAAGTGGATGAAGG 721
Query 601 AATTGGAGAGAATATTTTATGGAAATGTTGTTGCCTATGATGCTGCGCTACTTCCAGAAG 660
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 722 AGTTGGAGAGAATATTTTATGGAAATGTTGTTGCCTATGATGCTGCGCTACTTCCGGAAG 781
Query 661 CTAAACCAAATGAACTACAAATCAAATTATGGAGGAACGTATTTTCTGATGATGGAACAA 720
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 CTAAACCAAATGACCTACAAATCAAATTATGGAGGAACGTATTTTCTGATGATGGAACAA 841
Query 721 CAACACCTGATAACACAGATTTAAAAGCAGCACAGGCAATGGCAAGATATGTCCGGAGAG 780
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 842 CAACACCTGATAACACAGATTTAAAAACAGCACAGGCAATGGCAAGATATGTCCGGAGAG 901
Query 781 AACTTGGTTCTCTTTCTTTAACAGATAAAGAGTCCATATTCTCTGGTAATTTCTCCTTCA 840
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 902 AACTTGGTTCTCTTTCTTTAACAGATAAAGAGTCCATATTCTCCGGCAATTTCTCCTTCA 961
Query 841 CCCCTTTGGAGAACAAGCCCCTGTGACTTGAATGAAATTAGAAGAA 886
|||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 962 CCCCTTTGGAGAACAAGCCCCTGTGATTTGAATGAAATTAGAAGAA 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43251600567
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5