BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949683
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32420.1 | Symbols: | F-box and associated interaction doma... 106 4e-22
> AT1G32420.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11701995-11702903 FORWARD LENGTH=909
Length=909
Score = 106 bits (57), Expect = 4e-22
Identities = 157/202 (78%), Gaps = 19/202 (9%)
Strand=Plus/Plus
Query 492 CTTGTCGAGTTTTCACATTGGGAGATCCCAAAAAGAAG---TGGATGAGA-ATTCAATGC 547
|||||| ||| |||||| |||||||||||| | ||||| |||| |||| || |||
Sbjct 587 CTTGTCAAGTATTCACAGTGGGAGATCCCATAGAGAAGCCTTGGA-GAGACATCCAA--- 642
Query 548 GGCATTGGAAG-TCACTTTCCATTAGATA-ATGCAGTTTGCATCAATGGGGCAATCTATT 605
|||||||| || ||||||| | || || | |||| ||||||||||| || | |||||||
Sbjct 643 GGCATTGG-AGTTCACTTT-CTTTTGAAAGATGCTGTTTGCATCAACGGTGTTATCTATT 700
Query 606 ACAAAGCAACGAAAATGAA-ACCGAACGAAGGTTCTGTT-TTGGTGAGTTTCGATGTTAG 663
|| | ||||| |||||| | | | | | | || ||||||||||| ||||||||
Sbjct 701 ACCAGGCAAC--TAATGAATATGGTTC-CA-CATAT-TTCTTGGTGAGTTTTGATGTTAG 755
Query 664 GTCCGAGAAATTTAATCATGTC 685
||||||||||||||||||||||
Sbjct 756 GTCCGAGAAATTTAATCATGTC 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5