BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949695
Length=1825
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51480.1 | Symbols: SKS2 | SKU5 similar 2 | chr5:20910244-2... 2791 0.0
AT4G25240.1 | Symbols: SKS1 | SKU5 similar 1 | chr4:12930402-12... 1783 0.0
> AT5G51480.1 | Symbols: SKS2 | SKU5 similar 2 | chr5:20910244-20913451
FORWARD LENGTH=2266
Length=2266
Score = 2791 bits (1511), Expect = 0.0
Identities = 1719/1821 (94%), Gaps = 7/1821 (0%)
Strand=Plus/Plus
Query 6 AAAATCACTGAGATTA-AACAAATGGCGGCTACTGAttttttcttcgctttcgtcttctc 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 AAAATCACTGAGATTATTACAAATGGCGGCTACTGATTTTTTCTTCGCTTTCGTCTTCTC 227
Query 65 cttcgctcttctcttcggcttctctttcgctGGTGATCCTTACGTATCTTACGATTTCAG 124
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 228 TTTCGCTCTTATCTTCGGCTTCTCTTTCGCTGGTGATCCTTACGTCTCTTACGATTTCAC 287
Query 125 TGTTTCGTACATCACAGCTTCTCCTCTCGGTGTTCCTCAACAGGTTATAGCAGTCAATGG 184
| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 CCTCTCCTACATCACTGCTTCTCCTCTCGGTGTTCCTCAACAGGTTATAGCAGTCAATGG 347
Query 185 GAAATTTCCAGGTCCTGTGATTAATGCTACTACAAACTACAATGTTGATGTTAACGTATT 244
|||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |
Sbjct 348 GAAATTTCCAGGTCCTGTGATTAACGCTACGACAAACTACAATGTTCATGTTAACGTACT 407
Query 245 CAATCATTTGGATGAGCCTCTCTTACTTACTTGGCCTGGTGTTCAGATGCGGCGTAACTC 304
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 408 CAATCATTTGGATGAGCCTCTTTTACTTACTTGGCCTGGTGTTCAGATGAGGCGTAACTC 467
Query 305 GTGGCAAGACGGTGTTCTTGGAACAAACTGTCCAATTCCACCGAAATGGAACTTCACTTA 364
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 468 GTGGCAAGACGGTGTTCTTGGAACAAACTGTCCAATTCCACCGAATTGGAACTTCACTTA 527
Query 365 TGATTTTCAGTTGAAAGATCAGATTGGAAGTTATTTCTACTCTCCTTCACTTAACTTCCA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 528 TGATTTTCAGTTGAAAGATCAGATTGGAAGTTATTTCTACTCTCCTTCACTTAACTTTCA 587
Query 425 GAGAGCCTCTGGTGGTTTTGGTTCAATCATAATCAATAACCGAGACCTCGTTCCTATCCC 484
|||||||||||||||||||||| || |||||||||||||| ||||||| |||||||| ||
Sbjct 588 GAGAGCCTCTGGTGGTTTTGGTGCACTCATAATCAATAACAGAGACCTTGTTCCTATTCC 647
Query 485 GTTCACTAAGCCTGATGGTGAAATCATCTTTATTATTGGTGATTGGTATACTCAGAACCA 544
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 GTTCACTGAGCCTGATGGTGAAATCATCTTTATTATTGGTGATTGGTATACTCAGAACCA 707
Query 545 TACAGCTTTAAGGAGGATACTTGACTCTGGTAAAGAACTTGGGATGCCGGATGGAGTGCT 604
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 708 TACAGCTTTAAGGAGGATACTTGACTCTGGTAAAGAACTTGGGATGCCCGATGGAGTACT 767
Query 605 CATCAATGGGAAAGGTCCTTTCAAGTACAATAGCAGTGTTCCTGATGGAATTGAACATGA 664
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 768 CATCAATGGGAAAGGTCCTTTCAAGTACAATAGCAGTGTACCTGATGGAATTGAACATGA 827
Query 665 AACCGTTAATGTTGATCCAGGGAAGACATACAGGATCCGCGTTCACAATGTTGGTATCTC 724
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 828 AACCGTTAATGTTGATCCAGGGAAAACATACAGGATCCGTGTTCACAATGTTGGTATCTC 887
Query 725 GACAAGCTTGAACTTCAGGATTCAGAACCACAAATTGCTCTTGATTGAGACTGAGGGTCG 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 GACAAGCTTGAACTTCAGGATTCAGAACCACAAATTGCTCTTGATTGAGACTGAGGGTCG 947
Query 785 CTACACCTCCCAAATAAACTTCACCGATTTCGATATTCATGTGGGACAGTCTTATTCTTT 844
||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 948 CTACACCTCCCAAATGAACTTCACCGATTTTGATGTTCATGTGGGACAGTCTTATTCTTT 1007
Query 845 CTTGGTAACCATGGACCAAAACGCCACAAGTGATTACTACATTGTGGCGAGTGCTAGATT 904
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1008 CCTGGTAACCATGGACCAAAACGCCACAAGTGACTACTACATTGTGGCGAGTGCTAGATT 1067
Query 905 TGTTAATGAAACAGTGTGGCAAAGAGTCACAGGTGTTGGCATTCTCCATTATTCCAATTC 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 TGTTAATGAAACAGTGTGGCAAAGAGTCACAGGTGTTGGCATTCTCCATTATTCCAATTC 1127
Query 965 CAAAGGACCTGCTTCTGGTCCTTTGCCAGTTCCAGCAACTGATGTTTCTCACCCTTGGTC 1024
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1128 CAAAGGACCTGCTTCTGGTCCTTTGCCAGTTTCAGCAACTGATGTTAATCACCCTTGGTC 1187
Query 1025 CGCAATGAACCAACCAAGAGCCATAAAGCAAAACACATCTGCAGGTGGAGCTCGTCCAAA 1084
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1188 TGCAATGAACCAACCGAGAGCCATAAAGCAAAACACATCTGCAAGTGGAGCTCGTCCAAA 1247
Query 1085 TCCGCAAGGATCATTTCACTACGGACAGATAAATATCACAAGCACATACATCTTGAGGAG 1144
|||||| ||||||||||||||||||||||| || || ||||| |||||||||||||||||
Sbjct 1248 TCCGCAGGGATCATTTCACTACGGACAGATCAACATTACAAGAACATACATCTTGAGGAG 1307
Query 1145 TTTGCCTCCAACAGAAATCAATGGGAAAATTCGTGCTACGCTTAATGGGATTTCATTTGT 1204
||||||||||||| |||||||||||||| |||||||||| |||||||| |||||||||||
Sbjct 1308 TTTGCCTCCAACAAAAATCAATGGGAAACTTCGTGCTACACTTAATGGAATTTCATTTGT 1367
Query 1205 CAATCCAAGCACCCCCATGAGGCTTGCAGATCACCATAAAGTGAAAGGAGATTATAAGCT 1264
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |
Sbjct 1368 CAATCCAAGCACCCCCATGAGGCTTGCGGATGACCATAAAGTGAAAGGAGATTATATGTT 1427
Query 1265 AGATTTCCCAGACAGACCACTTGATGAAAGACATCAACGTATGGACAGCTCTATCATCAA 1324
|||||| |||||||||||||||||||||| || || |||| || |||||||||||||||
Sbjct 1428 AGATTTTCCAGACAGACCACTTGATGAAAAACTTCCACGTTTGTCCAGCTCTATCATCAA 1487
Query 1325 CGCATCATACAAGGGCTTTATACAAGTTATCTTCCAGAACAATGACACCAAAATCCAGAG 1384
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 CGCAACATACAAGGGCTTTATACAAGTTATCTTCCAGAACAATGACACCAAAATCCAGAG 1547
Query 1385 CTTCCATATTGATGGATATTCATTTTACGTGGTTGCAATGGACTTTGGTATATGGTCAGA 1444
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1548 CTTCCATATTGATGGATATGCATTTTACGTGGTTGCGATGGACTTTGGTATATGGTCAGA 1607
Query 1445 AGACAGAAA-AGGTTCATATAACAACTGGGATGCAATTGCACGAAGCACGATCGAGGTTT 1503
||||||||| || ||| |||||||||||||||||| | |||||||||||| | ||||| |
Sbjct 1608 AGACAGAAACAG-TTCTTATAACAACTGGGATGCAGTAGCACGAAGCACGGTGGAGGTCT 1666
Query 1504 ATCCAGGGGCATGGACTGCTGTACTTGTTTCCCTCGATAATGTTGGAGTTTGGAACATTC 1563
||||||| |||||||||||||||||| |||| ||||||||||||||||||||||| || |
Sbjct 1667 ATCCAGGAGCATGGACTGCTGTACTTATTTCTCTCGATAATGTTGGAGTTTGGAATATCC 1726
Query 1564 GAGTAGAGAATCTTGACAGATGGTATCTTGGTGAAGAAACATACATGCGAATTGTAAACC 1623
| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1727 GGGTTGAGAATCTTGACAGATGGTATCTTGGCCAAGAAACATACATGCGAATTATAAACC 1786
Query 1624 CCGAGGAAAACGGAAGTACAGAAATGGATCCGCCTCAAAATGTTCTGTACTGTGGTGCTC 1683
| ||||||||||||||||| ||||||||||||||| |||||||| |||| ||||||||||
Sbjct 1787 CTGAGGAAAACGGAAGTACGGAAATGGATCCGCCTGAAAATGTTATGTATTGTGGTGCTC 1846
Query 1684 TTCAGGCCATGCAAAAGGAACAACATCACAGCTCTGCTGGAACATCAAT-ACTAAATGGA 1742
|||||||||||||||||||||||||||||||||| || || |||||| || |||||||
Sbjct 1847 TTCAGGCCATGCAAAAGGAACAACATCACAGCTCGGCCACAAAATCAATGAC-AAATGGA 1905
Query 1743 CAGTTGAAACTAATTTTCAGCATGATGATGTTTTTGCTCGCCTCGGTTTCAG-CCTTTTG 1801
||||||| |||||||||||||||||||||| |||||||| ||||| |||| | |||||||
Sbjct 1906 CAGTTGATACTAATTTTCAGCATGATGATGGTTTTGCTCTCCTCGTTTTC-GTCCTTTTG 1964
Query 1802 CTGAGTCTCTTGCATCATTTA 1822
|||||||| || |||||||||
Sbjct 1965 CTGAGTCTGTTCCATCATTTA 1985
> AT4G25240.1 | Symbols: SKS1 | SKU5 similar 1 | chr4:12930402-12933892
FORWARD LENGTH=2236
Length=2236
Score = 1783 bits (965), Expect = 0.0
Identities = 1516/1777 (85%), Gaps = 57/1777 (3%)
Strand=Plus/Plus
Query 52 ctttcgtcttctccttcgctcttctcttcggc-ttctctttcgctGG-TGATCCTTACGT 109
||||| || ||| ||| |||||||||| || | || |||||||| || || |||| |||
Sbjct 167 CTTTC-TCCTCTGCTTTGCTCTTCTCTCCGCCGTT-TCTTTCGC-GGCGGACCCTTTCGT 223
Query 110 ATCTTACGATTTCAGTGTTTCGTACATCACAGCTTCTCCTCTCGGTGTTCCTCAACAGGT 169
|| ||||| ||||| ||||| ||| |||| |||||||| ||||| ||||||||||||||
Sbjct 224 CTCCTACGACTTCAGAGTTTCTTACCTCACTGCTTCTCCCCTCGGCGTTCCTCAACAGGT 283
Query 170 TATAGCAGTCAATGGGAAATTTCCAGGTCCTGTGATTAATGCTACTACAAACTACAATGT 229
|||||| ||||||||| | |||||||| ||| || ||||||||||||| |||||||||||
Sbjct 284 TATAGCCGTCAATGGGCAGTTTCCAGGACCTCTGCTTAATGCTACTACCAACTACAATGT 343
Query 230 TGATGTTAACGTATTCAATCATTTGGATGAGCCTCTCTTACTT-ACTTGGCCTGGTGTTC 288
|| ||||||||| |||||||||||||||||||||||| | ||| |||||||||||| | |
Sbjct 344 TGTTGTTAACGTTTTCAATCATTTGGATGAGCCTCTCCT-CTTGACTTGGCCTGGTATCC 402
Query 289 AGATGCGGCGTAACTCGTGGCAAGACGGTGTTCTTGGAACAAACTGTCCAATTCCACCGA 348
| ||||||||||||||||||||||||||||||||||| |||||||| || ||||| || |
Sbjct 403 AAATGCGGCGTAACTCGTGGCAAGACGGTGTTCTTGGCACAAACTGCCCTATTCCTCCCA 462
Query 349 AATGGAACTTCACTTATGATTTTC-AGTTGAAAGATCAGATTGGAAG-TTATTTCTACTC 406
||||||||| ||||| | |||| || | || ||||| |||||||| || |||||||||
Sbjct 463 GATGGAACTTTACTTACCAATTTCAAG-TCAAGGATCAAATTGGAAGCTT-TTTCTACTC 520
Query 407 TCCTTCACTTAACTTCCAGAGAGCCTCTGGTGGTTTTGGTTCAATCATAATCAATAACCG 466
|||||||| ||||| |||||||| ||||||||||||||| | ||| | || ||||||||
Sbjct 521 CCCTTCACTCAACTTTCAGAGAGCATCTGGTGGTTTTGGTCCCATCGTGATTAATAACCG 580
Query 467 AGACCTCGTTCCTATCCCGTTCACTA-AGCCTGATGGTGAAATCATCTTTATTATTGGTG 525
||| | |||||||||| ||| | | |||||||||||||| ||||||| ||||||||||
Sbjct 581 GGACATTATTCCTATCCCTTTC-CCACAGCCTGATGGTGAACTCATCTTCATTATTGGTG 639
Query 526 ATTGGTATACTCAGAACCATACAGCTTTAAGGAGGA-TACTTGACTCTGGTAAAGAACTT 584
||||||| |||||| |||||| ||| ||||||| || |||||||||||| |||||||||
Sbjct 640 ATTGGTACACTCAGGACCATAAAGCATTAAGGA-GAGCACTTGACTCTGGGAAAGAACTT 698
Query 585 GGGATGCCGGATGGAGTGCTCATCAATGGGAAAGGTCCTTTCAAGTACAATAGCAGTGTT 644
|||||||| |||||||| |||||||||||||| ||||||| ||||||||| || |||||
Sbjct 699 GGGATGCCAGATGGAGTCCTCATCAATGGGAAGGGTCCTTACAAGTACAACAGTAGTGTA 758
Query 645 CCTGATGGAATTGA--ACATGAAACCGTTAATGTTGATCCAGGGAAGACATACAGGATCC 702
|||||||||||||| || | |||| || ||||||| |||||||| |||||||| ||||
Sbjct 759 CCTGATGGAATTGATTAC-T-TAACCTTTCATGTTGAACCAGGGAAAACATACAGAATCC 816
Query 703 GCGTTCACAATGTTGGTATCTCGACAAGCTTGAACTTCAGGATTCAGAACCACAAATTGC 762
| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 817 GTGTTCACAATGTTGGGATCTCGACAAGCTTGAACTTCAGGATTCAGAACCACAGTTTGC 876
Query 763 TCTTGATTGAGACTGAGGGTCGCTACACCTCCCAAATAAACTTCACCGATTTCGATATTC 822
| ||| | || || ||||||| ||| || || || |||||||| ||||| ||| |||
Sbjct 877 TTTTGGTAGAAACCGAGGGTCACTATACTTCACAGGCGAACTTCACTGATTTTGATGTTC 936
Query 823 ATGTGGGACAGTCTTATTCTTTCTTGGTAACCATGGACCAAAACGCCACAAGTGATTACT 882
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 937 ATGTAGGACAGTCTTATTCTTTCTTGGTAACCATGGACCAAGACGCCACAAGTGACTACT 996
Query 883 ACATTGTGGCGAGTGCTAGATTTGTTAATGAAACAGTGTGGCAAAGAGTCACAGGTGTTG 942
||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 997 ACATTGTTGCCAGTGCTAGATTTGTGAATGAAACAGTGTGGCAAAGAGTCACTGGTGTTG 1056
Query 943 GCATTCTCCATTATTCCAATTCCAAAGGACCTGCTTCTGGTCCTTTGCCAGTT-CCAGCA 1001
||||||||||||||| |||||||||||||||| |||||||||| | |||||| ||| |
Sbjct 1057 CCATTCTCCATTATTCTAATTCCAAAGGACCTGTTTCTGGTCCTCTACCAGTTCCCA-AA 1115
Query 1002 ACTGATGTTTCTCA-CCCTTGGTCCGCAATGAACCAACC-AAGAGCCATAAAGCAAAACA 1059
|| ||||||||| | ||| ||||| ||||||| ||| || |||| |||| | ||||||||
Sbjct 1116 ACAGATGTTTCT-AGCCCGTGGTCAGCAATGAGCCAGCCGAAGA-CCATCAGGCAAAACA 1173
Query 1060 CATCTG-CAGGTGGAGCTCGTCCAAATCCGCAAGGATCATTTCACTACGGACAGATAAAT 1118
|||||| || |||||||||||||||||||||| ||||||||||| || || || |||||
Sbjct 1174 CATCTGCCA-GTGGAGCTCGTCCAAATCCGCAGGGATCATTTCATTATGGTCAAATAAAC 1232
Query 1119 ATCAC-AAGCACATACATCTTGAGGAGTTTGCCTCCAACAGA-AATCAATGGGAAAATTC 1176
||||| || ||||||||| ||||| ||||||||||||||| | ||| || ||| | |||
Sbjct 1233 ATCACTAA-CACATACATTTTGAGAAGTTTGCCTCCAACA-ATAATTAACGGGGCACTTC 1290
Query 1177 GTGCTACGCTTAATGGGATTTCATTTGTCAATCCAAGCACCCCCA-TGAGGCTTGCAGAT 1235
||||||| ||||| ||||| |||||||| |||||||||| | ||| |||||||||| |||
Sbjct 1291 GTGCTACACTTAACGGGATCTCATTTGTGAATCCAAGCA-CTCCAGTGAGGCTTGCGGAT 1349
Query 1236 CACCATAAAGTGAAAGGAGATTATAAGCTAGATTTCCCAGACAGACCACTTGATGAA-AG 1294
| | ||||||||||||||| ||||||||| || ||||| |||||| | ||| | || ||
Sbjct 1350 CGCAATAAAGTGAAAGGAGCTTATAAGCTGGACTTCCCTGACAGA-C-CTT--TTAATAG 1405
Query 1295 ACATCAACGTATGGACAGCTCTATCATCAACGCATCATACAAGGGCTTTATACAAGTTAT 1354
|| || ||| |||| || ||||| ||||||||| ||||||||||||||||||||||| |
Sbjct 1406 ACCTCTTCGTTTGGATAGATCTATGATCAACGCAACATACAAGGGCTTTATACAAGTTGT 1465
Query 1355 CTTCCAGAACAATGACACCAAAATCCAGAGCTTCCATATTGATGGATATTCATTTTACGT 1414
|||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |||
Sbjct 1466 TTTCCAGAACAATGACACCAAGATCCAGAGCTTCCATGTTGATGGCTATTCATTTTTCGT 1525
Query 1415 GGTTGCAATGGACTTTGGTATATGGTCAGAAGACAGAAAA-GGTTCATATAACAACTGGG 1473
|||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||
Sbjct 1526 TGTTGGGATGGACTTTGGTATTTGGTCAGAAGACA-AAAAGGGTTCATATAACAACTGGG 1584
Query 1474 ATGCAAT-TGCACGAAGCACGATCGAGGTTTATCCAGGGGCATGGACTGCTGTACTTG-T 1531
|||| || | || ||||||| |||||||| || || |||| ||||| ||||||| || |
Sbjct 1585 ATGCCATCT-CAAGAAGCACAATCGAGGTATACCCTGGGGGTTGGACGGCTGTAC-TGAT 1642
Query 1532 TTCCCTCGATAATGTTGGAGTTTGGAACATTCGAGTAGAGAATCTTGACAGATGGTATCT 1591
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 TTCCCTTGATAATGTCGGAGTTTGGAACATTCGAGTAGAGAATCTTGACAGATGGTATCT 1702
Query 1592 TGGTGAAGAAACATACATGCGAATTGTAAACCCCGAGGAAAACGGAA-GTACAGAAATGG 1650
|||||||||||| || ||||| || |||||||||||| | |||| | ||||| ||||
Sbjct 1703 TGGTGAAGAAACTTATATGCGGATCACAAACCCCGAGGAGGATGGAAAG-ACAGAGATGG 1761
Query 1651 ATCCGCCTCAAAATGTTCTGTACTGTGGTGCTCTTCAGGCCATGCAAAAGGAACAACATC 1710
|||| ||| | ||||| || ||||||||||||||| || | |||| ||||||||||| |
Sbjct 1762 ATCCTCCTGACAATGTCCTATACTGTGGTGCTCTTAAGAACTTGCAGAAGGAACAACA-C 1820
Query 1711 ACAGCTCTGCTGGAACATCAATACTAAATGGACAGTTGAAACTAATTTTCAGCATGATGA 1770
|| ||| |||| |||||| |||||||||||||| ||||| ||||| | | | | |||
Sbjct 1821 -CA-CTCAGCTGCAACATCTATACTAAATGGACACTTGAAGCTAATGCT-A-C-TAATGG 1875
Query 1771 TGTTTTTGCTCGCCTCGGT-TTCAGCCTTTTGCTGAG 1806
|||| |||||||||||| ||||| ||||||||||
Sbjct 1876 TGTT---GCTCGCCTCGGTGTTCAGA-TTTTGCTGAG 1908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90310780455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5