BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949697
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51500.1 | Symbols: | Plant invertase/pectin methylesterase... 865 0.0
AT5G51490.1 | Symbols: | Plant invertase/pectin methylesterase... 756 0.0
AT2G45220.1 | Symbols: | Plant invertase/pectin methylesterase... 104 1e-21
> AT5G51500.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr5:20917929-20919838 REVERSE LENGTH=1623
Length=1623
Score = 865 bits (468), Expect = 0.0
Identities = 598/662 (90%), Gaps = 4/662 (1%)
Strand=Plus/Plus
Query 34 CGTTCC-GGA-ACGGCTGGTCCGGCCAAGGGACATGCCGTGGCACTACGGTCATCCTCGG 91
|||||| | | ||||| |||||||| || || || || ||||||||||||||||||||||
Sbjct 962 CGTTCCAGAACACGGCAGGTCCGGCAAAAGGCCAGGCAGTGGCACTACGGTCATCCTCGG 1021
Query 92 ACCTCTCAATCTTCTACAAATGCTCAATCGAAGGATACCAAGACACACTGATGGTCCATT 151
|||||||||||||||| | |||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1022 ACCTCTCAATCTTCTATAGATGCTCCATCGAAGGATACCAAGACACATTGATGGTCCATT 1081
Query 152 CGCAACGCCAGTTTTACCGTGAATGCTACATTTACGGAAGTGTCGATTTTATCTTCGGAA 211
| |||||||||||||| || || |||||||| || |||| ||||||||| ||||||||||
Sbjct 1082 CACAACGCCAGTTTTATCGCGAGTGCTACATCTATGGAACTGTCGATTTCATCTTCGGAA 1141
Query 212 ACGCAGCCGTCGTTTTCCAAAACTGTCTTATCCTCCCTCGTCGGCCACTCAAAGGTCAAG 271
|||| ||||| ||||||||||||||| | ||||| ||||| | |||||||||||||||||
Sbjct 1142 ACGCGGCCGTTGTTTTCCAAAACTGTATCATCCTGCCTCGCCTGCCACTCAAAGGTCAAG 1201
Query 272 CCAATGTGATAATCGCACAAGGTCGTACTGATCTAATTCAAAACAAAGGGATCTCTATCC 331
||||||| |||| |||||||||||||||||||||| |||| |||| |||||||||||| |
Sbjct 1202 CCAATGTAATAACCGCACAAGGTCGTACTGATCTATTTCAGAACACAGGGATCTCTATTC 1261
Query 332 ATAACTCAATAATCATACCGGCTCCTGATC-TAAAACCGGTGGTCCGTAGCGTTAAAACG 390
||||||||||||||||||| |||||||| | ||||||||||||||||||| ||||| ||
Sbjct 1262 ATAACTCAATAATCATACCCGCTCCTGA-CTTAAAACCGGTGGTCCGTAGTGTTAAGACA 1320
Query 391 TATATGGGCCGACCTTGGATGAAGTACTCGCGCACTGTGGTTCTTAAGACGTATATAGAT 450
|||||||| ||||| ||||||| |||||| ||||| ||||||||||||||||| || |||
Sbjct 1321 TATATGGGTCGACCCTGGATGATGTACTCCCGCACCGTGGTTCTTAAGACGTACATCGAT 1380
Query 451 AGTGTTGTGAGTGCGGTCGGGTGGTCTTCGTGGACTAAAGGTTCGACATATGGTCTCAAC 510
|||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct 1381 AGTGTTGTGAGTCCTGTCGGGTGGTCTCCGTGGACTAAAGGTTCGACGTATGGTCTCGAC 1440
Query 511 ACGCTGTTCTATGCAAAATATAAGAATATCGGACCGGCTTCATCCACGAGGTGGCGAGTC 570
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1441 ACGCTGTTCTATGCGGAATATAAGAATATCGGACCGGCTTCATCCACGAGGTGGCGTGTC 1500
Query 571 CGTTGGAAAGGGTTTCATGTCTTGAGTAAAGCCTCTGATGTATCTGCTTTCACTGTTGGA 630
|||||||||||||||||||| ||||||||||| || |||| |||||||||| ||||||||
Sbjct 1501 CGTTGGAAAGGGTTTCATGTGTTGAGTAAAGCTTCCGATGCATCTGCTTTCTCTGTTGGA 1560
Query 631 AAATTCATAGCTGGTACTGCGTGGCTCCCAAGCACTGGCATACCCTTCACTTTAGAACTC 690
|||||||| ||||||||||||||||||||| || |||||||||||||||||| |||||||
Sbjct 1561 AAATTCATCGCTGGTACTGCGTGGCTCCCAGGCTCTGGCATACCCTTCACTTCAGAACTC 1620
Query 691 TA 692
||
Sbjct 1621 TA 1622
> AT5G51490.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr5:20913553-20915606 REVERSE LENGTH=1738
Length=1738
Score = 756 bits (409), Expect = 0.0
Identities = 584/670 (87%), Gaps = 6/670 (1%)
Strand=Plus/Plus
Query 46 GCTGGTCCGGCCAAGGGACATGCCGTGGCACTACGGTCATCCTCGGACCTCTCAATCTTC 105
|||||||| |||||||| || ||||||||||| || ||||| || |||||||||||||||
Sbjct 964 GCTGGTCCAGCCAAGGGCCAGGCCGTGGCACTTCGTTCATCGTCTGACCTCTCAATCTTC 1023
Query 106 TACAAATGCTCAATCGAAGGATACCAAGACACACTGATGGTCCATTCGCAACGCCAGTTT 165
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1024 TACAAATGCTCAATCGAAGGATACCAAGATACACTGATGGTCCATTCTCAACGCCAGTTT 1083
Query 166 TACCGTGAATGCTACATTTACGGAAGTGTCGATTTTATCTTCGGAAACGCAGCCG-TCGT 224
|||||||| || ||||| || |||| |||||||| || ||||| ||||| || | | ||
Sbjct 1084 TACCGTGAGTGTTACATCTATGGAACCGTCGATTTCATATTCGGTAACGCGGCTGCT-GT 1142
Query 225 TTTCCAAAACTGTCTTATCCTCCCTCGTCGGCCACTCAAAGGTCAAGCCAATGTGATAAT 284
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || |
Sbjct 1143 TTTCCAAAACTGTCTCATCCTCCCTCGCCGGCCACTCAAAGGTCAAGCCAATGTAATTAC 1202
Query 285 CGCACAAGGTCGTACTGATCTAATTCAAAACAAAGGGATCTCTATCCATAACTCAATAAT 344
||||||||||||| |||||| |||| |||| ||||||||||||||||||||||| |||
Sbjct 1203 CGCACAAGGTCGTGCTGATCCGTTTCAGAACACAGGGATCTCTATCCATAACTCAAGAAT 1262
Query 345 CATACCGGCTCCTGATCTAAAACCGGTGGTCCGTAGCGTTAAAACGTATATGGGCCGACC 404
| |||||||||||||||||||||| |||||| ||| |||||| ||||| |||||||| ||
Sbjct 1263 CCTACCGGCTCCTGATCTAAAACCAGTGGTCGGTACCGTTAAGACGTACATGGGCCGGCC 1322
Query 405 TTGGATGAAGTACTCGCGCACTGTGGTTCTTAAGACGTATATAGATAGTGTTGTGAGTGC 464
||||||||||| ||| || || ||||||||| |||||||| | |||| |||||||||| |
Sbjct 1323 TTGGATGAAGTTCTCACGAACCGTGGTTCTTCAGACGTATTTGGATAATGTTGTGAGTCC 1382
Query 465 GGTCGGGTGGTCTTCGTGGACTAAAGGTTCGACATATGGTCTCAACACGCTGTTCTATGC 524
|||||||||||| |||||| | |||||||| | |||||| |||| || ||||||||
Sbjct 1383 AGTCGGGTGGTCTCCGTGGATTGAAGGTTCGGTGTTTGGTCTGGACACTCTCTTCTATGC 1442
Query 525 AAAATATAAGAATA-TCGGACCGGCTTCATCCACGAGGTGGCGAGTCCGTTGGAAAGGGT 583
| |||||||||||| | ||||| |||||||||||||||||||| ||| ||||||||||||
Sbjct 1443 AGAATATAAGAATACT-GGACCAGCTTCATCCACGAGGTGGCGTGTCAGTTGGAAAGGGT 1501
Query 584 TTCATGTCTTGAGTAAAGCCTCTGATGTATCTGCTTTCACTGTTGGAAAATTCATAGCTG 643
||||||| ||| ||| ||| || |||| ||||||||||||||||||||| || || ||||
Sbjct 1502 TTCATGTGTTGGGTAGAGCTTCCGATGCATCTGCTTTCACTGTTGGAAAGTTTATCGCTG 1561
Query 644 GTACTGCGTGGCTCCCAAGCACTGGCATACCCTTCACTT-TAGAACTCTAGAGGCCGTCT 702
|||| || ||||||||| |||| |||||||||||||||| | || ||||| || ||||||
Sbjct 1562 GTACAGCATGGCTCCCACGCACCGGCATACCCTTCACTTCTGGA-CTCTAAAGACCGTCT 1620
Query 703 TTGGTTTTTC 712
||||||||||
Sbjct 1621 TTGGTTTTTC 1630
> AT2G45220.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr2:18644084-18646447 REVERSE LENGTH=1786
Length=1786
Score = 104 bits (56), Expect = 1e-21
Identities = 121/152 (80%), Gaps = 6/152 (4%)
Strand=Plus/Plus
Query 88 TCGGACCTCTCAATCTTCTACAAATGCTCAATCGAAGGATACCAAGACACACTGAT-GGT 146
||||| || ||| | || ||| ||||| |||||| |||||||||||||| | ||
Sbjct 996 TCGGATCTGTCAGTTTTTTACCAATGCAGTTTCGAAGCTTACCAAGACACACT-CTACGT 1054
Query 147 CCATTCGCAA-CGCCAGTTTTACCGTGAATGCTACATTTACGGAAGTGTCGATTTTATCT 205
|| || ||| || ||||||||||| || ||| || |||| |||| ||||||||||||||
Sbjct 1055 TCACTC-CAACCGTCAGTTTTACCGCGATTGCGACGTTTATGGAACTGTCGATTTTATCT 1113
Query 206 TCGGAAACGCAGCCGTCGTTT-TCCAAAACTG 236
||||||||||||||| || || |||| |||||
Sbjct 1114 TCGGAAACGCAGCCG-CGGTTCTCCAGAACTG 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5