BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949703
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51550.1 | Symbols: EXL3 | EXORDIUM like 3 | chr5:20939494-2... 1722 0.0
> AT5G51550.1 | Symbols: EXL3 | EXORDIUM like 3 | chr5:20939494-20940895
REVERSE LENGTH=1402
Length=1402
Score = 1722 bits (932), Expect = 0.0
Identities = 1014/1054 (96%), Gaps = 3/1054 (0%)
Strand=Plus/Plus
Query 2 CACCCAATAAAGAAAAAA-CATGCATTCACTTCCGGTGATTCTCGTCCTCACCGCACTTA 60
||||||||||| |||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 70 CACCCAATAAAAAAAAAACCATGCATTCACTTCCGGTGAATCTCGTCCTCACCGTACTTA 129
Query 61 CGGTGTTCCTAACATCACCGGCGCAAGTCATCGGATACCGTCCATATCCTCCAAAAACCA 120
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 130 CGGTGTTCCTAACATCACCGGCGCAAGTTATCGGATACCGTCCATATCCACCAAAAACCA 189
Query 121 ACGGCTCCGATCAAATCTTCGACGCTTCaaaaaaaTTCGAAGGCTCATCGAATCTCGTCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 ACGGCTCCGATCAAATCTTCGACGCTTCAAAAAAATTCGAAGGCTCATCGAATCTCGTCC 249
Query 181 GCCTCCGCTACCACATGGGTCCAGTCTTAACCAACAACATCACGGTTCACCCAATCTGGT 240
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 250 GCCTCCGTTACCACATGGGTCCAGTCTTAACCAACAACATCACCGTTCACCCAATCTGGT 309
Query 241 ACGGCACGTGGCAAAAATCCCAGaaaaaaaTCATCCGTGAGTTTATAAACTCAATCTCAG 300
||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 310 ACGGCACGTGGCAAAAATCCCAGAAGAAAATCATCCGTGAGTTCATTAACTCAATCTCAG 369
Query 301 CCGTTGGATCTAAACGTCCTTCCGTTTCCGGTTGGTGGAAAACCGTACAGCTCTACACTG 360
||||||||||||||| ||||| || |||||||||||||||||||||||||| |||||||
Sbjct 370 CCGTTGGATCTAAACACCCTTCAGTCTCCGGTTGGTGGAAAACCGTACAGCTTTACACTG 429
Query 361 ACCAAACCGGATCTAACATTTCCGGTACGGTTCGTCTCGGTGCAGAGAAAAATGACCGGT 420
||||||| |||||||||||| ||||||||||||||||||||| ||||||||| |||||||
Sbjct 430 ACCAAACTGGATCTAACATTACCGGTACGGTTCGTCTCGGTGAAGAGAAAAACGACCGGT 489
Query 421 TTTATTCTCATGGTAAATCACTAACCCGGTTATCGATTCAATCCGTGATAAAATCCGCCG 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 490 TTTATTCTCATGGTAAATCACTTACCCGGTTATCGATTCAATCCGTGATAAAATCCGCCG 549
Query 481 TCGGTTCAAGATCTCGTCCGTTGCCGGTTAATCCTAAAAGCGGTTTATATCTTCTCCTCA 540
|| ||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 550 TCACTTCTAGGTCTCGCCCGTTGCCGGTTAATCCCAAAAGCGGTTTATATCTTCTCCTCA 609
Query 541 CCGCCGATGATGTCTACGTACAAGATTTTTGCGGCCAGGTTTGTGGATTTCACTATTTCA 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 610 CCGCCGATGATGTCTACGTGCAAGATTTTTGCGGCCAGGTTTGTGGATTTCACTATTTCA 669
Query 601 CGTTTCCGTCGATTGTTGGATTCACGTTACCGTACGCTTGGGTTGGAAACTCGGCGAAGC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 CGTTTCCGTCGATTGTTGGATTCACGTTACCGTACGCTTGGGTTGGAAACTCGGCGAAGC 729
Query 661 TTTGTCCCGGAGTTTGTGCTTATCCGTTCGCCGTACCGGAGTATATACCGGGGTTAAAAC 720
||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||
Sbjct 730 TTTGTCCCGGAGTTTGTGCTTATCCGTTCGCCGTACCGGCGTTTATACCGGGATTAAAAC 789
Query 721 CGGTTAAATCGCCGAACGGTGATGTTGGAGTAGATGGGATGATAAGTGTGATAGCTCACG 780
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 790 CGGTTAAATCGCCTAACGGAGATGTTGGAGTAGATGGGATGATAAGTGTGATAGCTCACG 849
Query 781 AGATTGCTGAGCTGGCGACGAATCCGTTGGTTAATGCTTGGTACGCAGGACCCGACCCGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 AGATTGCTGAGCTGGCGACGAATCCGTTGGTTAATGCTTGGTACGCAGGACCCGACCCGG 909
Query 841 TGGCTCCGGTTGAAATAGCGGATCTTTGTGAGGGTATTTATGGAACAGGAGGTGGTGGTT 900
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 TAGCTCCGGTTGAGATAGCGGATCTTTGTGAGGGTATTTATGGAACAGGAGGTGGTGGTT 969
Query 901 CGTACACAGGACAGATGTTGAACGATCATAGTGGTGCCACGTATAATGTTAATGGGATCC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 CGTACACAGGACAGATGTTGAACGATCATAGTGGTGCCACGTATAATGTTAATGGGATCC 1029
Query 961 GACGGCGGTATTTGATCCAGTGGTTATGGAGCCACGTGGTTAGTTACTGTACCGGACCCA 1020
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1030 GACGGCGGTATTTGATCCAGTGGTTATGGAGCCACGTTGTTAGTTACTGTACCGGACCCA 1089
Query 1021 ATGCGCTTGATTAGT-AGTGAAATGGTTTGGTTT 1053
||||||||||||||| | |||| |||| ||||||
Sbjct 1090 ATGCGCTTGATTAGTGAATGAA-TGGTATGGTTT 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5