BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949711
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51680.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 1711 0.0
AT5G51690.1 | Symbols: ACS12 | 1-amino-cyclopropane-1-carboxyla... 1498 0.0
> AT5G51680.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr5:20997320-20998907 FORWARD LENGTH=1455
Length=1455
Score = 1711 bits (926), Expect = 0.0
Identities = 1024/1073 (95%), Gaps = 0/1073 (0%)
Strand=Plus/Plus
Query 1 CAACGTAAGAGATACGAATAAATGTCTGAAATGGAACCTAAAGAAACAAAACCACCTCAA 60
|||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| |
Sbjct 251 CAACGTAAGAGATACGAACAAATGTCTGATATGGAACCAAAAGAAACAAAACCACCTCGA 310
Query 61 AAACAATTGAGACAGCCTCCTTCTGTTCCTTTCATTTGGGAAGAACGGCCTGGCTTCCCC 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 311 AAACAATTGAGACAGCCTCCTTCTGTTCCTTTCATTTGGGAAGAGCGGCCTGGCTTCCCC 370
Query 121 AAGAAGAATTGGCAACCTTCACTAGCCACTTTTGTGCCTTCTCCTCCTCAGCTTCCGCCA 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 371 AAGAAGAATTGGCAACCTTCACTAGCCACTTTTGTGCCTTCTCCTCCTCCGCTTCCGCCA 430
Query 181 CCTGTCCCAGTCCCGGTTAAGCTGGTCACATCGGTTCCTTTCCGTTGGGAAGAAACGCCT 240
||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 431 CCTATCCCAGTCCCGGTTAAGCTGGTAACATCAGTTCCTTTCCGTTGGGAAGAAACGCCT 490
Query 241 GGAAAACCACTCCCTCCATCCTCAAATGACCCACCACAGCTTCCACATCCACCATCGGAA 300
||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 491 GGAAAACCACTCCCTGCTTCCTCAAATGACCCACCTCAGCTTCCACATCCACCATTGGAA 550
Query 301 ACCGCTACGACGACTCCATTACCGCCTCCGGTTCCAGTTCCCGTTAAGCAGGTTACTTCA 360
||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 551 ACCGCTACGCCGACTCCATTACCGCCTCCAGTTCCTGTTCCGGTTAAGCAGGTTACTTCG 610
Query 361 GTTCCGTTCGATTGGGAAGAAACTCCTGGACAACCATACCCATGCTTTGTTGATACCAAT 420
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 611 GTTCCTTTCGATTGGGAAGAAACTCCAGGACAACCATACCCATGCTTTGTTGATACCAGT 670
Query 421 CCACCTGAGCCGTTGGATCAGCCGCTGCCACCTCCTCCCATGTACGGTGAGGTTGAAACC 480
|||||||||| ||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 671 CCACCTGAGCTGTTGGATCAACCGCTGCCACCGCCTCCCATGTACGGTGATGTTGAAACC 730
Query 481 AGCAGCGATATTTTTGATGACGCAAGCAGTGATTCCTTCAGCTCTGTACCATCTCTATTA 540
|||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||
Sbjct 731 AGCAGCGATATTTTTGATGATGCAAGCAGTGACTCCTTCAGCTCTGTGCCGTCTCTATTA 790
Query 541 GCAACAAACCGCTCAGTTTCGATATCCGGTGCTGTTGCGGTGGATGAATTTGATGACAAC 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 GCAACAAACCGCTCGGTTTCGATATCCGGTGCTGTTGCGGTGGATGAATTTGATGACAAC 850
Query 601 CTGAATAGAGTGACAAGTTCAATGCCAACATCACCAGCTTATGAATCTGATGACAGTACG 660
||||||| |||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct 851 CTGAATACAGTGACTAGCTCGATGCCAACATCGCCAGCTTATGAATCTGATGACAGTACT 910
Query 661 AGCAGTTACATGACGGGCGCTTCCAGTCTTGTGGGAGCTTCGTTCTTGGAAAAGCTCTTT 720
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 AGCAGTTACATGACGGGAGCTTCCAGTCTTGTGGGAGCTTCGTTCTTGGAAAAGCTCTTT 970
Query 721 CCACGTCTTCTTCCATCAGAAAAGGTCAAAGCTGCTGATTCTGAAGACGTTCAGGTTTCT 780
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 971 CCACGTCTTCTTCCATCAGAAAAGGTCAAAGCTGCTGTTTCTGAGGACGTTCAGGTTTCT 1030
Query 781 ACTCATCCGTTGCATGAAGAAGTAAAGCTTACTACAGAATCTGACAACATGAGTATTGGA 840
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1031 ACTCATCCGTTGCATGAAGAAGTGAAGCTTACTACAGAAACTGACAACATGAGTATTGGC 1090
Query 841 TTTCCTGTGAGGACGCCTCAGACACTCGGGGAGCTGATAATGATGAGCCGAAGGAGAAGT 900
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1091 TTTCCTGTGAGGACGCCACAGACACTCGGGGAGCTGATAATGATGAGCAGAAGGAGAAGT 1150
Query 901 TATATGAGAAGAGCTGTTGAAATGAGAAAGCAGAATCCTTACAAGGAATTTACAAAGAAT 960
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1151 TATATGAGAAGAGCTGTTGAAATGAGAAAGCAGAATCCTTACACGGAATTTACAAAGAAT 1210
Query 961 GGAGCTGATAACTGCTGCCTTTTTGTGCCGGGAATCAAAATGATAGAAGGCCTTGAGTGG 1020
|||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1211 GGAGCTGATAGCTGCTGCCTCTTTGTGCCGGGCATCAAAATGATAGAAGGCCTTGAGTGG 1270
Query 1021 AAAAAATACCAACCGAGGTTGAAGCTCATTTAGAAGAAAACACTTACAAAGAT 1073
|||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1271 AAAAAATACCAACCGAGGTTGAAGCTCATTTAGAAGAAAACACTTATAAAGAT 1323
> AT5G51690.1 | Symbols: ACS12 | 1-amino-cyclopropane-1-carboxylate
synthase 12 | chr5:20997413-21001046 REVERSE LENGTH=3179
Length=3179
Score = 1498 bits (811), Expect = 0.0
Identities = 899/943 (95%), Gaps = 0/943 (0%)
Strand=Plus/Minus
Query 1 CAACGTAAGAGATACGAATAAATGTCTGAAATGGAACCTAAAGAAACAAAACCACCTCAA 60
|||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| |
Sbjct 3022 CAACGTAAGAGATACGAACAAATGTCTGATATGGAACCAAAAGAAACAAAACCACCTCGA 2963
Query 61 AAACAATTGAGACAGCCTCCTTCTGTTCCTTTCATTTGGGAAGAACGGCCTGGCTTCCCC 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2962 AAACAATTGAGACAGCCTCCTTCTGTTCCTTTCATTTGGGAAGAGCGGCCTGGCTTCCCC 2903
Query 121 AAGAAGAATTGGCAACCTTCACTAGCCACTTTTGTGCCTTCTCCTCCTCAGCTTCCGCCA 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2902 AAGAAGAATTGGCAACCTTCACTAGCCACTTTTGTGCCTTCTCCTCCTCCGCTTCCGCCA 2843
Query 181 CCTGTCCCAGTCCCGGTTAAGCTGGTCACATCGGTTCCTTTCCGTTGGGAAGAAACGCCT 240
||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2842 CCTATCCCAGTCCCGGTTAAGCTGGTAACATCAGTTCCTTTCCGTTGGGAAGAAACGCCT 2783
Query 241 GGAAAACCACTCCCTCCATCCTCAAATGACCCACCACAGCTTCCACATCCACCATCGGAA 300
||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 2782 GGAAAACCACTCCCTGCTTCCTCAAATGACCCACCTCAGCTTCCACATCCACCATTGGAA 2723
Query 301 ACCGCTACGACGACTCCATTACCGCCTCCGGTTCCAGTTCCCGTTAAGCAGGTTACTTCA 360
||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 2722 ACCGCTACGCCGACTCCATTACCGCCTCCAGTTCCTGTTCCGGTTAAGCAGGTTACTTCG 2663
Query 361 GTTCCGTTCGATTGGGAAGAAACTCCTGGACAACCATACCCATGCTTTGTTGATACCAAT 420
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 2662 GTTCCTTTCGATTGGGAAGAAACTCCAGGACAACCATACCCATGCTTTGTTGATACCAGT 2603
Query 421 CCACCTGAGCCGTTGGATCAGCCGCTGCCACCTCCTCCCATGTACGGTGAGGTTGAAACC 480
|||||||||| ||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 2602 CCACCTGAGCTGTTGGATCAACCGCTGCCACCGCCTCCCATGTACGGTGATGTTGAAACC 2543
Query 481 AGCAGCGATATTTTTGATGACGCAAGCAGTGATTCCTTCAGCTCTGTACCATCTCTATTA 540
|||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||
Sbjct 2542 AGCAGCGATATTTTTGATGATGCAAGCAGTGACTCCTTCAGCTCTGTGCCGTCTCTATTA 2483
Query 541 GCAACAAACCGCTCAGTTTCGATATCCGGTGCTGTTGCGGTGGATGAATTTGATGACAAC 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2482 GCAACAAACCGCTCGGTTTCGATATCCGGTGCTGTTGCGGTGGATGAATTTGATGACAAC 2423
Query 601 CTGAATAGAGTGACAAGTTCAATGCCAACATCACCAGCTTATGAATCTGATGACAGTACG 660
||||||| |||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct 2422 CTGAATACAGTGACTAGCTCGATGCCAACATCGCCAGCTTATGAATCTGATGACAGTACT 2363
Query 661 AGCAGTTACATGACGGGCGCTTCCAGTCTTGTGGGAGCTTCGTTCTTGGAAAAGCTCTTT 720
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2362 AGCAGTTACATGACGGGAGCTTCCAGTCTTGTGGGAGCTTCGTTCTTGGAAAAGCTCTTT 2303
Query 721 CCACGTCTTCTTCCATCAGAAAAGGTCAAAGCTGCTGATTCTGAAGACGTTCAGGTTTCT 780
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 2302 CCACGTCTTCTTCCATCAGAAAAGGTCAAAGCTGCTGTTTCTGAGGACGTTCAGGTTTCT 2243
Query 781 ACTCATCCGTTGCATGAAGAAGTAAAGCTTACTACAGAATCTGACAACATGAGTATTGGA 840
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 2242 ACTCATCCGTTGCATGAAGAAGTGAAGCTTACTACAGAAACTGACAACATGAGTATTGGC 2183
Query 841 TTTCCTGTGAGGACGCCTCAGACACTCGGGGAGCTGATAATGATGAGCCGAAGGAGAAGT 900
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 2182 TTTCCTGTGAGGACGCCACAGACACTCGGGGAGCTGATAATGATGAGCAGAAGGAGAAGT 2123
Query 901 TATATGAGAAGAGCTGTTGAAATGAGAAAGCAGAATCCTTACA 943
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 2122 TATATGAGAAGAGCTGTTGAAATGAGAAAGCAGAATCCTTACA 2080
Score = 219 bits (118), Expect = 6e-56
Identities = 126/130 (97%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 944 AGGAATTTACAAAGAATGGAGCTGATAACTGCTGCCTTTTTGTGCCGGGAATCAAAATGA 1003
||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 1946 AGGAATTTACAAAGAATGGAGCTGATAGCTGCTGCCTCTTTGTGCCGGGCATCAAAATGA 1887
Query 1004 TAGAAGGCCTTGAGTGGAAAAAATACCAACCGAGGTTGAAGCTCATTTAGAAGAAAACAC 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1886 TAGAAGGCCTTGAGTGGAAAAAATACCAACCGAGGTTGAAGCTCATTTAGAAGAAAACAC 1827
Query 1064 TTACAAAGAT 1073
||| ||||||
Sbjct 1826 TTATAAAGAT 1817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52559970615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5