BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949712
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51690.1 | Symbols: ACS12 | 1-amino-cyclopropane-1-carboxyla... 2401 0.0
> AT5G51690.1 | Symbols: ACS12 | 1-amino-cyclopropane-1-carboxylate
synthase 12 | chr5:20997413-21001046 REVERSE LENGTH=3179
Length=3179
Score = 2401 bits (1300), Expect = 0.0
Identities = 1460/1538 (95%), Gaps = 8/1538 (1%)
Strand=Plus/Plus
Query 3 CTATCGCCGCGGCGGAGCCGTTTCCGATGAGGCTGATAGTACCTCTCCGTGGCGTAATCC 62
||||| |||||||||||| |||||||||||| ||||||||||||||||||| ||||| |
Sbjct 64 CTATCTCCGCGGCGGAGCATTTTCCGATGAGGTTGATAGTACCTCTCCGTGGAGTAATTC 123
Query 63 ACGGCCGTGGCGGTCTCTTCGTCGGCTCTCTCATTCCTTGTTGTCTCTTCTACTTTCTCC 122
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 AAGGCCGTGGTGGTCTCTTCGTCGGCTCTCTCATTCCTTGTTGTCTCTTCTACTTTCTCC 183
Query 123 AGCTTTACCTAAAACGACGCCGTCCTCCTCCCTCCGACCCGGCGGAATTACCGAGAACGT 182
|||| ||||| |||||||||||||||||||||||||||||| |||| ||||||||||| |
Sbjct 184 AGCTCTACCTTAAACGACGCCGTCCTCCTCCCTCCGACCCGACGGACTTACCGAGAACTT 243
Query 183 CGTCACGGACTAATCTCTTCTCTCGTGGAAACTCGATCGGACGAGTTCGAGTCTCCTCTC 242
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 244 TTTCACGGACTAATCTCTTCTCTCGCGGGAACTCGATCGGACGAGTTCGAGTCTCCTCCC 303
Query 243 GAGCGGTTCCTGTGGCTAAACCTTCCGATTCGCCTTATTACATTGGGTTGGAGAGAGTCA 302
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GAGCAGTTCCTGTAGCTAAACCTTCCGATTCGCCTTATTACATTGGGTTGGAGAGAGTCA 363
Query 303 AGACGGATCCGTACGATCGGATTAAGAACACGGATGGGATTATTCAGCTTGGATTAGCTG 362
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 364 AAACGGATCCGTACGATCGGATTACGAACACGGATGGGATTATTCAGCTTGGATTAGCCG 423
Query 363 AGAGTACGCTGTGCTTGGACTTGCTTCAGAGATGGATGTCTGAGAATTTGATGGATTCAA 422
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 424 AGAGTACGCTGTGCTTTGACTTGCTACAGAGATGGATGTCAGAGAATTTGATGGAGTCAA 483
Query 423 TGATGCAATCTGATGATGGTGAATTTGATATTAGTAGTATCGCCATGTATAAACCTTTTG 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TGATGCAATCTGATGATGGTGAATTTGATATTAGTAGTATCGCCATGTATAAACCTTTTG 543
Query 483 AAGGATTGCTGGAACTTAGAGTGGCTTTTGCTGATTTCATGTCACGAATAATGGGAAGTA 542
||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 544 AAGGATTACTTGAACTCAGAGTGGCTTTTGCTGATTTCATGTCACGAATAATGGGAGGTA 603
Query 543 ATGTGTCATTTGA-CCCGTCAAACATGGTTATAACAGCTGGTGGGACTCCTGCTATCGAA 601
||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 604 ATGTGTCATTTGATCCC-TCAAATATGGTTATAACAGCCGGTGGGACTCCTGCTATTGAA 662
Query 602 GTATTGGCCTTCTGCTTGGCAGATCATGGAAATGCTTTTCTAATTCCTACGCCATATTAT 661
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 663 GTATTGGCCTTCTGTTTGGCTGATCATGGAAATGCTTTTCTAATTCCGACGCCATATTAT 722
Query 662 CCAGGCTTTGACAGGGATATTAAATTCCGGACAGGAGTGGAGCTTATACCAGTACACTGC 721
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 CCAGGCTTTGATAGGGATATTAAATTCCGGACAGGAGTGGAGCTTATACCAGTACACTGC 782
Query 722 CGTAGCTCTGACAATTTTACTGTAACGGTTTCCGCACTAGAACAAGCTTTGAATCAGGCT 781
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 783 CGTAGCTCTGACAATTTTACTGTAACGGTTTCCGCACTGGAACAAGCTTTGAATCAGGCT 842
Query 782 AGAAAACGAGGAAGCAAGGTTTCTGGCATCCTCTTTTCAAACCCTTCAAATCCAGTTGGG 841
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 843 AGAAAACGAGGAAGCAAGGTTTCTGGCATCCTCTTTTCAAACCCGTCAAATCCTGTTGGA 902
Query 842 AACATACTATCTAGGGAGACACTCCAAGATATTTTGAGATTTGCTCAAGAGAAAAACATC 901
||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 903 AACATACTATCAAGGGAGACGCTTTGTGATATTTTGAGATTTGCTCAAGAGAAGAACATC 962
Query 902 CATGTTATATCTGATGAAATATTTGCGGGTTCTGTTTACGGGGACAAAGAGTTTGTTAGC 961
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CATGTTATTTCTGATGAAATATTTGCGGGTTCTGTTTACGGGGACAAAGAGTTTGTTAGC 1022
Query 962 ATGGCTGAGATTGCTGGCTCAGGGGAATTTGATAAGAGTAGGGTTCATATCATCTATGGC 1021
||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1023 ATGGCTGAGATCGCTGGCTCAGGGGAATTTGATAAGACTAGGGTTCATATCATATATGGC 1082
Query 1022 TTGTCAAAGGACCTTTCAATTCCCGGTTTTAGAGCTGGAGTCATCTACTCCTTTCATGAA 1081
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1083 TTGTCAAAAGACCTTTCAATTCCTGGTTTTAGAGCTGGAGTCATCTACTCCTTTCATGAA 1142
Query 1082 GACGTAGTAAATGCTGCAAAGAAGCTGATGAGATTTTCATCAGTGCCAGTTCCT-GTCCA 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 1143 GACGTAGTAAATGCTGCAAAGAAGCTGATGAGATTTTCATCAGTGCCAGTTC-TAGTTCA 1201
Query 1141 AAGGATACTTATCTCTCTGCTATCTGATGTTAGATTCATTGAGGAATACATGAG-AGCAC 1199
|||||||||||||||||| ||||||||||| ||||||||||||| ||||||| | |||||
Sbjct 1202 AAGGATACTTATCTCTCTACTATCTGATGTAAGATTCATTGAGGGATACATG-GCAGCAC 1260
Query 1200 ACAGGCAAAGGATCCGGGATAAGCATATTCGGTTTGTGGAAGGTTTGAAACAATTAGGAA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 ACAGGCAAAGGATCCGGGATAAGCATATTCGGTTTGTGGAAGGTTTGAAACAATTAGGAA 1320
Query 1260 TTCCATGTGCTGAGAGTGGTGGTGGGTTGTATTGTTGGGTTGACATGAGCAGTTTACTGA 1319
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1321 TACCATGTGCTGAGAGTGGTGGTGGGTTGTATTGTTGGGTAGACATGAGCAGTTTACTGA 1380
Query 1320 CATCCTACAGTGAGAAAGGAGAACTCGAATTATTTGAGAAGCTATTGACTGTTGCTAAGA 1379
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1381 CATCTTACAGTGAGAAAGGAGAACTCGAGTTATTTGAGAAGCTATTGACTGTTGCTAAGA 1440
Query 1380 TTAATGCCACTCCAGGAACAGCCTGTTATTGTATTGAACCGGGTTGGTTCAGGTGCTGTT 1439
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1441 TTAATGCCACTCCAGGAACAGCCTGTTATTGTATAGAACCAGGTTGGTTCAGGTGCTGTT 1500
Query 1440 TTACCGCTTTAGCTGATGAAGATATCCCAGTGATTATGGAACGGATCAGACAGCTTAGG- 1498
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1501 TCACCGCTTTAGCTGATGAAGATATCCCAGTGATTATGGAACGAATCAGACAGCTT-GCT 1559
Query 1499 GAATCATCTAGATCTTGAGGTCGAACCAGAATTTAGGT 1536
||||||| |||||||||||||||||||||||||| |||
Sbjct 1560 GAATCATTTAGATCTTGAGGTCGAACCAGAATTTTGGT 1597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75802822950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5