BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949730
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51830.1 | Symbols: | pfkB-like carbohydrate kinase family ... 1692 0.0
> AT5G51830.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr5:21069572-21071735 FORWARD LENGTH=1454
Length=1454
Score = 1692 bits (916), Expect = 0.0
Identities = 1008/1053 (96%), Gaps = 3/1053 (0%)
Strand=Plus/Plus
Query 19 AAATGGGTGAGAACGCCATCTCAGGTAATCTCAAGAATCTAACGATCGACACAAGAGATT 78
||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 AAATGGGTGAGGATGCAATCTCAGGTAATCTCAAGAATCTAACGATCGACACAAGAGATT 195
Query 79 CAGAAACTCTTGTGGTATGTTTCGGTGAAATGTTGATTGATTTTGTTCCAACGGTGGGAG 138
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 196 CAGAAACTCTTGTGGTATGTTTCGGTGAAATGTTGATTGATTTTGTTCCTACGGTGGGAG 255
Query 139 GTGTTTCACTAGCTGAAGCACCAGCTTTCAAGAAAGCTCCTGGAGGAGCTCCTGCAAATG 198
|||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 256 GTGTTTCATTGGCTGAAGCACCAGCTTTCAAGAAAGCTCCTGGAGGAGCTCCTGCTAATG 315
Query 199 TAGCTGTTGGTGTCTCTAGACTTGGTGGTTCGTCTGCTTTTATTGGAAAGGTTGGTGATG 258
|||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 316 TAGCTGTTGGTGTCTCTAGACTTGGTGGCTCCTCTGCTTTCATTGGAAAGGTTGGTGATG 375
Query 259 ATGAGTTTGGAAGAATGTTAGCTGATATTCTAAGGCTTAACAATGTCGATAACTCTGGGA 318
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 376 ATGAGTTTGGAAGAATGTTAGCTGATATTCTAAGGCTGAACAATGTTGACAACTCTGGGA 435
Query 319 TGAGATTCGACCACAATGCACGGACTGCTCTT-GCGTTTGTTACACTAAGAGGTGATGGA 377
||||||||||||| ||||||||||||||| || || |||||||| |||||||||||||||
Sbjct 436 TGAGATTCGACCATAATGCACGGACTGCT-TTGGCCTTTGTTACGCTAAGAGGTGATGGA 494
Query 378 GAGAGGGAGTTTTTGTTCTTCAGGCATCCGAGTGCTGATATGCTTCTTTTGGAATCTGAG 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 GAGAGGGAGTTTTTGTTCTTCAGGCATCCGAGTGCTGATATGCTTCTTTTGGAATCTGAG 554
Query 438 CTTGATAAGAACCTCATCCAAAAGGCCAAGATCTTTCACTACGGATCTATCAGTTTGATT 497
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CTTGACAAGAACCTCATCCAAAAGGCCAAGATCTTTCACTACGGATCTATCAGTTTGATT 614
Query 498 GAGGAACCTTGCCGTTCTACTCAGCTTGCAGCTATGAAAATCGCTAAATCCGCAGGGAGT 557
|||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 615 GAGGAACCTTGCCGTTCTACTCAGCTTGTAGCTATGAAAATCGCTAAGGCTGCAGGGAGT 674
Query 558 CTTTTATCTTATGATCCGAATTTGAGATTGCCATTGTGGCCATCAGAAGAAGCTGCAAGG 617
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 675 CTTTTATCTTATGACCCGAATTTGAGATTGCCGTTGTGGCCATCAGAAGAAGCTGCTAGG 734
Query 618 AAAGAGATCATGAGTATCTGGAATTTAGCTGATGTTATAAAGATTAGCGAGGACGAGATT 677
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 735 AAAGAGATAATGAGTATCTGGAATTTAGCTGATGTTATAAAGATTAGCGAAGACGAGATA 794
Query 678 ACATTCCTGACCGGTGGGGATGATCCTTATGATGATGATGTGGTGTTGCAAAAGCTCTTT 737
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 ACATTCCTGACCGGTGGTGATGATCCTTATGATGATGATGTGGTGTTGCAAAAGCTCTTT 854
Query 738 CATCCCAATCTTAAGCTTCTTGTTGTTTCAGAAGGACCTAATGGCTGTAGATACTACACT 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 CATCCCAATCTTAAGCTTCTTGTTGTTTCAGAAGGACCTAATGGCTGTAGATACTACACT 914
Query 798 AAGGAGTTTAAAGGCAGAGTTGCTGGAGTAAAAGTGAAGCCAGTTGATACAACCGGTGCA 857
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 915 CAGGAGTTTAAAGGTAGAGTTGGTGGAGTAAAAGTGAAGCCAGTTGATACAACCGGTGCA 974
Query 858 GGAGATGCATTCGTGAGCGGGTTATTGAACAGCTTAGCTTCTGATATCACTATTCTCAAG 917
||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 975 GGAGATGCATTCGTGAGCGGGTTATTGAACAGCTTAGCTTCTGATCTTACTCTTCTCAAG 1034
Query 918 GATGAGAAGAAACTAAGAGAGGCGCTTCTATTCGCAAACGCTTGTGGAGCCATTACAGTA 977
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1035 GATGAGAAGAAACTAAGAGAGGCGCTTCTATTTGCAAACGCATGTGGAGCCATTACAGTA 1094
Query 978 ACAGAGAGAGGAGCAATTCCGGCGATGCCAAGCATGGATGCTGTTCAAGATCTTCTGACT 1037
|||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1095 ACAGAGAGAGGAGCGATACCGGCGATGCCAAGCATGGATGCTGTTCAAGATCTTCTTTCT 1154
Query 1038 TCTTCTCGCTCTTAAAATGCTTCAAAAAGTCTC 1070
||| ||||||| ||||||||||||||| |||||
Sbjct 1155 TCTACTCGCTCCTAAAATGCTTCAAAA-GTCTC 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52509770070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5