BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949734
Length=637
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51860.1 | Symbols: | K-box region and MADS-box transcripti... 821 0.0
> AT5G51860.1 | Symbols: | K-box region and MADS-box transcription
factor family protein | chr5:21081844-21084427 REVERSE
LENGTH=783
Length=783
Score = 821 bits (444), Expect = 0.0
Identities = 499/526 (95%), Gaps = 2/526 (0%)
Strand=Plus/Plus
Query 1 TTTTGTAGGAATTCATTGAAATGGTGAGAGGAAAGATTGAGATCAAGAAGATCGAGAACG 60
|||| | |||| | | ||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 128 TTTTCTTGGAAGTAACTGAAATGGTGAGAGGAAAGATCGAAATCAAGAAGATTGAGAACG 187
Query 61 TAACAAGTAGACAAGTCACGTTTTCCAAACGAAGGAGTGGTCTCTTTAAGAAGGCTCATG 120
| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 188 TGACAAGTAGACAAGTCACGTTTTCGAAGCGAAGGAGTGGTCTCTTTAAGAAGGCTCATG 247
Query 121 AGCTTTCTGTTCTATGTGATGCTCAAGTCGCAGCAATGATCTTCTCTCAGAAAGGAAGAT 180
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 248 AGCTTTCTGTTCTATGTGATGCTCAAGTGGCAGCTATGATCTTCTCTCAGAAAGGAAGAT 307
Query 181 TATATGAATTCGCTAGCTCCGATATCAGGAATATGATCAAGCGATACGCTGAGTACAAGA 240
||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct 308 TATATGAATTCGCTAGCTCCGATATCAGGAACACGATAAAGCGATACGCTGAGTACAAGA 367
Query 241 GGGAGTACTTTGTTGCAGAAGCACATCCTATAGAGCAATATGTGCAGGGGCTAAAGAAGG 300
| ||||| |||||||||||| | ||||||||||||||||| |||||||||||||||||||
Sbjct 368 GAGAGTATTTTGTTGCAGAAACTCATCCTATAGAGCAATACGTGCAGGGGCTAAAGAAGG 427
Query 301 AAATGGTGACAACGGTGAAAAAGATTGAAGTGCTTGAAGTCCATAACCGGAAGATGATGG 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 AAATGGTGACAATGGTGAAAAAGATTGAAGTGCTTGAAGTCCATAACCGGAAGATGATGG 487
Query 361 GACAAAGTTTGGCTTCTTGTTCGGTAAAAGAACTT-CAGGAGATAGCCACACAGATAGAG 419
|||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 488 GACAAAGTTTGGATTCTTGTTCGGTAAAAGAACTTTCAG-AGATAGCCACACAGATAGAG 546
Query 420 AAAAGCCTTCATATTGTTAGATTAAGAAAGGCTAAGTTATATGAAGATGAGCTAGAGAAA 479
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 547 AAAAGCCTTCATATGGTTAGATTAAGAAAGGCTAAGTTATATGAAGATGAGCTACAGAAA 606
Query 480 CTAAAAGCCAAGGAGAGGGAACTCAAGGACGAGAGAGTCAGGCTTT 525
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 CTAAAAGCCAAGGAGAGGGAACTCAAGGACGAGAGAGTCAGGCTTT 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30743297964
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5