BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949736
Length=724
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51880.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1116 0.0
> AT5G51880.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr5:21089383-21090941
FORWARD LENGTH=931
Length=931
Score = 1116 bits (604), Expect = 0.0
Identities = 676/710 (95%), Gaps = 7/710 (1%)
Strand=Plus/Plus
Query 1 AACCCAGAAACGCGAAGACGATGGGAGACAAAGGAGAATCAATAAAATGGCCGAAGATCA 60
|||||||||||||| | | |||||||||||| |||||||||||||||||||| |||||||
Sbjct 65 AACCCAGAAACGCG-A-A-GATGGGAGACAATGGAGAATCAATAAAATGGCCAAAGATCA 121
Query 61 AACTCAAATCGAATCTCAATGTCTCTTATCTTAAGAATCATGATCTCTTCACCGTGGAGA 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AACTCAAGTCGAATCTCAATGTCTCTTATCTTAAGAATCATGATCTCTTCACCGTGGAGA 181
Query 121 ACTGTTTGAGTTCTGATGAATCAAAGGGTTTTGTTAAAATTGCAGAGTCTCTTGGTTTCA 180
||||| | | ||||||||||||||||| |||||||||||| ||||||||||||||||| |
Sbjct 182 ACTGTCTCACTTCTGATGAATCAAAGGCTTTTGTTAAAATAGCAGAGTCTCTTGGTTTTA 241
Query 181 CTCACCAAGGAAGTCGTGGCCCAGCCTATGGTGAAGCTTATAGGGATAACCATCGGATCT 240
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CTCATCAAGGAAGTCGTGGTCCAGCCTATGGTGAAGCTTATAGGGATAACCATCGGATCT 301
Query 241 CAGTGAACGATCCTGTCCTTGCTGATTCGATATGGCAATC-GGGTCTTTCTG-ATTTGTT 298
|||||||||||||||||||||||||| || |||||||||| ||| ||||| | |||||||
Sbjct 302 CAGTGAACGATCCTGTCCTTGCTGATACGCTATGGCAATCAGGG-CTTTC-GAATTTGTT 359
Query 299 TACTGATATCAAGATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCTAACATTAGATTTTA 358
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TACTGATATCAAGATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCAAACATTAGATTTTA 419
Query 359 CAGGTATAGTGCTGGTCAGCATTTTGGTCGTCACATCGATGAAAGTGCTGATCTTGAAGA 418
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CAGGTATAGTGCTGGTCAACATTTTGGTCGTCACATCGATGAAAGTGCTGATCTTGAAGA 479
Query 419 TGGAAAGCGGACCTATTACACATTGTTGATATATTTAAGCGGGAACAGCACGAAATCAAA 478
|||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 480 TGGAAACCGGACCTATTACACATTGTTGATATATCTAAGCGGGAACAGCACAAAATCAAA 539
Query 479 ATCCAAGAGCAGTTCAAGCAAGACGAATGATTCTTCTTCAGCTGAGCCTTTAGTAGGTGG 538
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 540 ATCCAAGAGCAGTTCAAGCAAGACGAACGATTCTTCTTCGGCTGAGCCTTTAGTAGGTGG 599
Query 539 AGAAACTGTCTTTTATGGTTCAAGGAACAGTATCGTAGCTGAGGTAGCTCCAGTGGAAGG 598
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 AGAAACCGTTTTTTATGGTTCAAGGAACAGTATTGTAGCTGAGGTAGCTCCAGTGGAAGG 659
Query 599 TATGGCTCTCTTTCACATCCATGGAGACAAGTGCATGTTGCACGAAGGAAGGAGTGTTTC 658
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 660 TATGGCTCTCTTTCACATCCATGGAGACAAGTGCATGTTGCACGAAGGGAGGAATGTCTC 719
Query 659 CAAAGGCGTCAAGTATGTGTTCCGTTCTGATGTTGTTTTTGCATAAAGAA 708
|||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 CAAAGGCGTCAAGTATGTGTTCCGTTCTGATGTTGTTTTTGCATGAAGAA 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35113668753
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5