BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949741
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51920.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent t... 2521 0.0
> AT5G51920.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent
transferases superfamily protein | chr5:21097106-21098959 REVERSE
LENGTH=1854
Length=1854
Score = 2521 bits (1365), Expect = 0.0
Identities = 1643/1775 (93%), Gaps = 28/1775 (2%)
Strand=Plus/Plus
Query 1 CTTTTGCA-CCAAAAAGAGGAAG-AAAATGCTTCAACCATTTCCGGGAGATTCACCACCA 58
|||||||| ||||||| | |||| ||||||| ||||| ||||| |||||||| |||||
Sbjct 20 CTTTTGCACCCAAAAA-AAGAAGAAAAATGCACCAACCCTTTCCCGGAGATTCTTCACCA 78
Query 59 CCAAACTGCCTTCACGGCTGCTTCTCATCGTCACCATTTCACGGTGCCGCC-GCCTCCAA 117
||||||||||||||||||||||||||||||||||||||||||||| || || | |||| |
Sbjct 79 CCAAACTGCCTTCACGGCTGCTTCTCATCGTCACCATTTCACGGTACCACCAG-CTCCGA 137
Query 118 ACACCCACCAGATTCAATCCCCACCGTCACATCCGCCACTCTCCGCCGTAATTTCGCCCA 177
|||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||
Sbjct 138 ACACCCACCACATTCAACCCCCACCGTCACTTCCGCTACTCTCCGCCGTAATTTCGCCCA 197
Query 178 AACCACGGTCTCCGCCATCTTCCCGGACACCGAATTCGTCGACCCAAATTCTCTCCCTTC 237
|||||| |||||| ||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 198 AACCACCGTCTCCACCATCTTCCCGGACACCGAATTCACCGACCCAAATTCTCTTCCTTC 257
Query 238 TCATCAAGAATCCTTCTCCGATTTCATCCAAGCTTACCCCAATTACTCCGACACTTACAA 297
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 258 TCATCAAGAATCTTTCTCCGATTTCATCCAAGCTTACCCCAACTACTCCGACACTTACAA 317
Query 298 GATCGACCGTATCAGATCCGACCACTACTTTCACTTGGGGTTATCACATTACACGTGTCT 357
|||||||||| | |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 318 GATCGACCGTCTTAGATCCGACCACTACTTTCACTTGGGTTTATCACATTACACATGTCT 377
Query 358 TGATTACATTGGAATTGGTTTATACTCTTACTCTCAGTTGCTCAACTACGACCCTTCCAC 417
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 378 TGATTACATAGGAATTGGTTTGTACTCTTACTCTCAGTTGCTCAACTACGACCCTTCCAC 437
Query 418 TTATCAGATCTCCTCTTCCTTGTCTGAAAGTCCTTTCTTTAGTGTGTCTCCCAAGATTGG 477
||| |||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 438 TTACCAGATCTCTTCTTCCTTGTCTGAAAGTCCCTTCTTCAGTGTTTCTCCCAAGATTGG 497
Query 478 TAACCTCAAGGAGAAGCTTCTCCACGATGGAGGTCAAGAAACAGAATTTGAGTACTCGAT 537
|||||| ||||| ||||||||| |||||||||||||||||||||| ||||||||||| ||
Sbjct 498 TAACCTTAAGGAAAAGCTTCTCAACGATGGAGGTCAAGAAACAGAGTTTGAGTACTCAAT 557
Query 538 -AAAGAGAAGAATCATGGGTTTTCTCAAAATCTCCGAGGAAGACTACTCAATGGTCTTCA 596
||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 558 GAAA-AGAAGAATAATGGGGTTTCTCAAAATCTCCGAGGAAGACTACTCAATGGTCTTCA 616
Query 597 CCGCCAATAGAACTTCTGCTTTCAGGCTCGTCGCTGAGTCTTACCCGTTTAACTCAAAAC 656
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 617 CCGCTAATAGAACTTCTGCTTTCAGGCTCGTCGCCGAGTCTTACCCGTTTAACTCAAAAC 676
Query 657 GAAAGCTTTTGACGGTTTACGACTACGAAAGCGAGGCGGTGAATGAAATAAACAGAGTCT 716
| ||||| |||||||||||||||||||| || |||||||||| |||||||||||||||||
Sbjct 677 GGAAGCTCTTGACGGTTTACGACTACGAGAGTGAGGCGGTGAGTGAAATAAACAGAGTCT 736
Query 717 CTGAGAAACGTGGAGCCAAAGTAGTTGCGGCTGAATTCTCATGGCCAAGACTCAAACTCT 776
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 737 CTGAGAAACGTGGAGCCAAAGTAGCTGCAGCTGAATTCTCATGGCCAAGACTCAAACTCT 796
Query 777 GTTCGTCCAAGCTGAGGAAGA-TGGTCACTGCTGGGAAAAACGGAAGCAAGAAGAAGAAG 835
||||||||||||||| ||| | |||| ||||||||||||||||||||||||| |||||||
Sbjct 797 GTTCGTCCAAGCTGA-GAAAACTGGTTACTGCTGGGAAAAACGGAAGCAAGACGAAGAAG 855
Query 836 AAAGGTATTTTCGTCTTTCCGCTTCATTCTAGGGTTACAGGATCTAGGTATCCGTATCTA 895
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 AAAGGTATTTACGTCTTTCCGCTTCATTCTAGGGTTACAGGATCTAGGTATCCGTATCTA 915
Query 896 TGGATGAGTGTGGCGCAAGAAAATGGGTGGCATGTGATGATTGATGCTTGCGGTTTGGGA 955
|||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 916 TGGATGAGTGTGGCACAAGAAAATGGGTGGCATGTAATGATCGATGCATGCGGTTTGGGA 975
Query 956 CCTAAGGATATGGACAGCTTCGGTCTCTCGATATATAACCCCGATTTCATGGTGTGTTCG 1015
|||||||||||||| || ||||| || || ||||||||||||||||||||||||||||||
Sbjct 976 CCTAAGGATATGGATAGTTTCGGGCTTTCTATATATAACCCCGATTTCATGGTGTGTTCG 1035
Query 1016 TTCTACAAGGTGTTTGGAGAAAACCCTTCGGGATTTGGTTGCTTGTTTGTCAAGAAATCC 1075
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1036 TTCTACAAGGTGTTTGGAGAAAACCCTTCCGGATTTGGTTGCTTGTTTGTCAAGAAATCC 1095
Query 1076 ACCAT-TCCGATTCTTGAATCTTACACTGGCTC-AGGTATGGTTAACCTCGTACCTACAG 1133
||||| || |||||||||||||| |||||| || ||||||| |||||||||||||||| |
Sbjct 1096 ACCATATC-GATTCTTGAATCTTCCACTGG-TCCAGGTATGATTAACCTCGTACCTACCG 1153
Query 1134 ACAATCCGCTTTCGTTACACGCGTTGGAAGAAATCAGCCGGACACAAACAGAATT-GGAT 1192
|||||||| |||| ||||||||||||||| | ||| ||| ||||||||||| || |||
Sbjct 1154 ACAATCCGATTTCATTACACGCGTTGGAA-A--TCAACCGAACACAAACAGA-TTCGGAA 1209
Query 1193 GAAACATATAGCTTTAGTTCTAGCGTCGAATACAAAGGCCTAGATCATGTGGACTCACTA 1252
||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1210 GAAACATATAGCTTTAGCTCTAGTGTCGAATACAAAGGCCTAGATCATGTAGATTCACTA 1269
Query 1253 GGGTTGGTAGCAACAGGGAATAGGTCAAGATGCTTGATAAATTGGTTAGTAAGTGCTCTC 1312
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1270 GGGTTGGTAGCAACAGGGAACAGATCAAGATGCTTGATAAATTGGTTGGTAAGTGCTCTC 1329
Query 1313 TACAAACTCAAACATTCAACAACTAGTCGTCTCGTCAAAATCTACGGTCC-AAAGGTTAA 1371
|||||||||||||||||||||||||||||||| || |||||||||||||| |||| ||||
Sbjct 1330 TACAAACTCAAACATTCAACAACTAGTCGTCTAGTTAAAATCTACGGTCCGAAAG-TTAA 1388
Query 1372 TTTCAATCGAGGACCAGCGGTTGCATTCAATCTATTCAACCAAAAAGGCGAGAAAATAGA 1431
|||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct 1389 TTTCAATCGAGGACCAGCGGTTGCGTTCAATCTATTCAACCATAAAGGCGAAAAAATCGA 1448
Query 1432 ACCTTTTATCGTGCAGAAGCTAGCCGA-TAGCAGCAATATCTCAATCGG-AAAAGGTTTC 1489
||||||||||||||||||| ||||||| | ||||||| |||||| |||| ||||| ||||
Sbjct 1449 ACCTTTTATCGTGCAGAAGTTAGCCGAAT-GCAGCAACATCTCACTCGGTAAAAG-TTTC 1506
Query 1490 TTGAAGAACATCTTGTTCGAAGAGGACAACGAAGGAGTGAAAGATAGAGTGTTTGAGAAG 1549
|||||||||||||||||| |||| ||| ||||||| |||||||||||||| |||||||||
Sbjct 1507 TTGAAGAACATCTTGTTCCAAGAAGACTACGAAGGCGTGAAAGATAGAGTTTTTGAGAAG 1566
Query 1550 aaaaaaaaCAGAGACATCGACGAACCG-GGAATCTCTGTTCTCACTGCTGCGTTAGGGTT 1608
|||| |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1567 AAAAGAAACAGAGACGTCGACGAACCAAGGA-TCTCTGTTCTCACTGCTGCGTTAGGGTT 1625
Query 1609 TCTTGCTAATTTCGAAGATGTTTATAAGCTTTGGATTTTCGTTGCTCGGTTTTTAGATTC 1668
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 1626 TCTTGCTAATTTCGAAGATGTTTATAAACTTTGGATATTCGTTGCTCGGTTTTTGGATTC 1685
Query 1669 AGAATTTGTAGATAAAGAGAGTGGGAGATGTGGTGTTCATGTTTTTGAACACAAGAACCG 1728
||| ||||| ||||||||||||| ||||||||| ||||||||||||||||| ||||||||
Sbjct 1686 AGAGTTTGTTGATAAAGAGAGTGTGAGATGTGGAGTTCATGTTTTTGAACATAAGAACCG 1745
Query 1729 CGAAGTAGTCTAGTTTA--TATAGCCTAGTTTTGG 1761
|||||||||||||| | ||||||||||||||||
Sbjct 1746 TGAAGTAGTCTAGTTAACATATAGCCTAGTTTTGG 1780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87097945575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5