BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949744
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51930.1 | Symbols: | Glucose-methanol-choline (GMC) oxidor... 667 0.0
AT5G51950.1 | Symbols: | Glucose-methanol-choline (GMC) oxidor... 431 1e-119
AT3G56060.1 | Symbols: | Glucose-methanol-choline (GMC) oxidor... 298 1e-79
> AT5G51930.1 | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase
family protein | chr5:21101123-21103568 FORWARD LENGTH=1749
Length=1749
Score = 667 bits (361), Expect = 0.0
Identities = 891/1135 (79%), Gaps = 83/1135 (7%)
Strand=Plus/Plus
Query 418 CGATCATATCGT-TGGGACTAAGATTGGCGGTACAATCTTTGACCCCGCGGGCCATAGAC 476
|||||||||| | || |||||||| || |||||||||||||||| || || |||||||
Sbjct 654 CGATCATATC-TACGGCACTAAGATCGGTGGTACAATCTTTGACCGTGCTGGTCATAGAC 712
Query 477 ATTCGGCTGCAAATCTGTTAGAGTATGCTAA-CCCGGACAC-GATTGTTGTTTACTTGCA 534
|| | || || |||||||||||||||||||| ||| || | ||||||||||||||||||
Sbjct 713 ATACCGCGGCGAATCTGTTAGAGTATGCTAATCCC-AAC-CGGATTGTTGTTTACTTGCA 770
Query 535 CGC-TCTTGTTCACAAAATCCTCTTCACCACTAAAGGAAGATCGAGGCCTGAGGCGTGTG 593
|| || |||||||||| ||||||||||||| ||| | |||| ||
Sbjct 771 TGCTTC-TGTTCACAAAGTCCTCTTCACCAC-----------CGA------A-GCGTATG 811
Query 594 GAGTTATATATCAAGACGCAAATGGAGTGTTTCACAAAGCAAAACTCGCGAAA-AATGCA 652
||| ||| | | || |||||||||||||| ||||| ||||| || || ||| || |||
Sbjct 812 AAGTGCTATTTGAGGATGCAAATGGAGTGTTCCACAAGGCAAATCTAGC-AAATAAGGCA 870
Query 653 ATGAGCGAGGTGATTTTGTGTGCGGGTGCCATTGGG-AGCCCGCAACCATTGATGTTGAG 711
| || ||| ||||| |||| || || ||| |||| ||||| |||| ||| ||||||||
Sbjct 871 ACGAACGAAGTGATCTTGTCAGCTGGAGCC-CTGGGTAGCCCACAACTATTAATGTTGAG 929
Query 712 TGGTGTGGGTCCTAG-GGCCCATCTTGAGGCCCACGGGGTCCATCCGA-TGGTCCTCGAT 769
||| || |||||| | | |||||||||||| ||||| || | || | | ||||| |||
Sbjct 930 TGGAGTAGGTCCT-GCCGTCCATCTTGAGGCTCACGGCGT-GAACCCACTCGTCCTAGAT 987
Query 770 CAACCCATGGTTGGGCAAGGGATGGGAGATAATCCAATGAACCTTGT-CCTCGTCCCTTC 828
|| |||||||||||||| ||||||| |||||||| |||||| |||| | | | |||||
Sbjct 988 CAGCCCATGGTTGGGCAGGGGATGGCTGATAATCCCATGAACTTTGTAGC-CATTCCTTC 1046
Query 829 TCCTCAACTTGTAGAACTGTCCCTCGTA-GAGGTCGTTGGTATCACCAAGTTTTATGA-T 886
|||||||| |||||||| |||||| || || | ||||| ||||| |||||| || | |
Sbjct 1047 TCCTCAACCAGTAGAACTATCCCTCATACAAGCT-GTTGGGATCACAAAGTTTGAT-AGT 1104
Query 887 TTCATTGAAGGTGGAAGTGGCTTAAGCCTCTCTCATAACT-TGACCCGTAGGTTCTTCGA 945
| |||||||||| ||||||||| || |||||| | | | | || |||||||| |||||
Sbjct 1105 TACATTGAAGGTCTAAGTGGCTTGAGTCTCTCTTTTGA-TATAACTCGTAGGTTTTTCGA 1163
Query 946 TGGTAATTTGAATATTCT---C-A-AC--G--AGAC-AC-TC--------TCC--ACCCA 984
|||| ||||||| || | | | || | | || || || ||| |||||
Sbjct 1164 TGGTGTTTTGAATCTTTTAAACGAGACAAGTCATACTACATCTAGGAAAATCCTGACCCA 1223
Query 985 GTCAATCGTAG-ACTTCTTCAAATCCTTGGATCTTCCATT-GAATATGATGGA-AAATGC 1041
|| || | || ||| || ||||| || ||| || ||| ||| ||| ||| ||||
Sbjct 1224 ATCCATTGCAGTCCTT-TTAAAATCTTTTGATGTTAAATTGGAA-GTGA-GGATGAATGG 1280
Query 1042 GGGCTTGATCTTCCACAAAGTAGATGGACCAGTCTCAAGAGGATACCTA-GAA-CTCCGG 1099
||| |||||||| || ||||| |||||||| | ||||| ||| || || ||| || |||
Sbjct 1281 GGGTTTGATCTTTCAAAAAGTCGATGGACCGGCCTCAAAAGG--ACATATGAAGCTACGG 1338
Query 1100 AACAAAAACCCGGA-TGAGAACCCTTCAGTGACATTCAATTACTACCAAGAACCAGAAGA 1158
|||| ||||| | || || ||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1339 AACACGAACCC-AAGGGATAATCCTTCAGTGACATTCAACTACTATCAAGAACCAGAGGA 1397
Query 1159 TCTTGAA-AGGTGTGTTAAAGGACTTAATACCATTATTA-AAGTGATAAAATCGAAGGCC 1216
| ||||| | |||||||||||| ||||| |||||||||| || ||||||| || || ||
Sbjct 1398 T-TTGAACAAGTGTGTTAAAGGGCTTAACACCATTATTAGAA-TGATAAATTCCAAAGCT 1455
Query 1217 TTCTCGAAGTACAAGTACCCGAATGAGACCGTACGCGGACTACTCAATCGCACGCTTAG- 1275
||||| ||||||||||| ||| || ||| | ||| | ||| ||||||| || | || |
Sbjct 1456 TTCTCCAAGTACAAGTATCCGGGTGTGACGGCACGTGAACTGCTCAATCTCATG-TTGGC 1514
Query 1276 CCTTCCTATCAATCTAAGGCCAAAACACATCTCCTCGA-AGTCCAACTTGACGCAGTTTT 1334
|||||| |||||| | ||||||| ||| | |||| | || |||||||| ||||||||
Sbjct 1515 CCTTCCCATCAATTTGAGGCCAAGGCACGTGACCTC-AGCGTTCAACTTGAAGCAGTTTT 1573
Query 1335 GCATAGACACTGTGATGACTATTTGGCATTACCATGGAGGTTGCCAAGTTGGAAGAGTGG 1394
|||| ||||| |||| || | ||||||||||||||||||||||||||||||||| |||||
Sbjct 1574 GCATCGACACCGTGACGAGTGTTTGGCATTACCATGGAGGTTGCCAAGTTGGAAAAGTGG 1633
Query 1395 TTGACAAGAATTACAAAGTCTTAGGTATTGATGCCTTAAGGGTCATCGATGGATCCACAT 1454
||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||
Sbjct 1634 TTGACAAGAATTACAAAGTCTTAGGCATAGATGGCTTAAGGGTCATCGATGGATCCACAT 1693
Query 1455 TTCTCAAGTCTCCAGGGACCAATCCACAAGCCACGGTCATGATGCTCGGAAGGTA 1509
||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 1694 TTCTCAAGTCTCCCGGGACTAATCCTCAAGCCACGGTCATGATGCTTGGAAGGTA 1748
Score = 390 bits (211), Expect = 2e-107
Identities = 337/398 (85%), Gaps = 8/398 (2%)
Strand=Plus/Plus
Query 19 ATTTATGAAAGATGCAACACTAGCACCAACTTATGCTCGCTTCGACTACATAGTCATCGG 78
||||||||||||||||||| | ||||||| ||||| | |||||||||||| |||||||
Sbjct 177 ATTTATGAAAGATGCAACATTGGCACCAAAGAATGCTAGTTTCGACTACATAATCATCGG 236
Query 79 AGGAGGAACTTCCGGTTGTGCATTAGCCGCAACGCTCTCTCAAAACGCTAACGTTTTGGT 138
||||||||| | ||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 237 AGGAGGAACCGCAGGTTGTGCATTAGCCGCAACGCTCTCTCAAAACGCCAGCGTTTTGGT 296
Query 139 TCTTGAACGAGGCGGCTCTCCCTATGATAATCCTGCCGCTACGGATATCGAAAAATTCGC 198
||||||||| ||||| || || ||||| || || | || || ||||| | || | ||
Sbjct 297 TCTTGAACGCGGCGGGTCGCCATATGAGAACCCCACGGCCACTGATATGGGCAACTCCGT 356
Query 199 CAACACACTCTTAAACACCACACCAAAAGCGTGGTCGCAGCTTTTCATATCCGAGGACGG 258
||||||||||||||||| ||||||||| | ||||||||||||||||| ||||| |||||
Sbjct 357 CAACACACTCTTAAACAACACACCAAACTCATGGTCGCAGCTTTTCATCTCCGAAGACGG 416
Query 259 CGTTTATAACCATCG-TG-CGCGCGTCCTCGGTGGAGACTCGGTGTTGAACGCTGGGTTT 316
|||||| || || || | | || ||||||||||||| |||||| | |||| || ||
Sbjct 417 CGTTTACAA-CA-CGCGGCCACGTGTCCTCGGTGGAGGGTCGGTGATAAACGGAGGATTC 474
Query 317 TACTCACGTGCGGAG-GATTATTATGTGGA-GAAGTCTGAGTGGGAGATGGAGGAAGTGG 374
||||| ||||||| | || |||| ||||| |||| |||||||||||||||| |||||||
Sbjct 475 TACTCGCGTGCGG-GCAATGATTACGTGGAGGAAG-CTGAGTGGGAGATGGAAGAAGTGG 532
Query 375 AAGCTGCTTACGAGTGGGTCGAGAAGAAACTTGTGTTC 412
||||||||||||||||||||||||||||||||||||||
Sbjct 533 AAGCTGCTTACGAGTGGGTCGAGAAGAAACTTGTGTTC 570
> AT5G51950.1 | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase
family protein | chr5:21105909-21108605 REVERSE LENGTH=1991
Length=1991
Score = 431 bits (233), Expect = 1e-119
Identities = 408/494 (83%), Gaps = 6/494 (1%)
Strand=Plus/Plus
Query 1046 TTGATCTTCCACAAAGTAGATGGACCAG-TCTCAAGAGGAT-ACCTAGAACTCCGGAACA 1103
|||||| |||| ||| | | ||||| | |||| ||||| | | |||| || ||||||
Sbjct 1283 TTGATCCTCCAGAAAATCGCGGGACC-GATCTCGAGAGG-TCATTTAGAGCTTAGGAACA 1340
Query 1104 AAAACCCGGATGAGAACCCTTCAGTGACATTCAATTACTACCAAGAACCAGAAGATCTTG 1163
|||||||||||| || |||||||| | ||||| || || ||||| ||||| |||||
Sbjct 1341 CAAACCCGGATGATAATCCTTCAGTAAGGTTCAACTATTATCAAGAGCCAGAGGATCTAC 1400
Query 1164 AAAGGTGTGTT-AAAGGACTTAATACCATTATTAAAGTGATAAAATCGAAGGCCTTCTCG 1222
| | |||||| || ||| | || ||||||||||||||||| || || ||||| |||||
Sbjct 1401 AGATATGTGTTGAAGGGA-TCAACACCATTATTAAAGTGATCAACTCCAAGGCATTCTCC 1459
Query 1223 AAGTACAAGTACCCGAATGAGACCGTACGCGGACTACTCAATCGCACGCTTAGCCTTCCT 1282
|| | |||||||||| | | |||| ||| ||||||||| ||| | ||| ||| |||||
Sbjct 1460 AAATTCAAGTACCCGGACGCGACCATACATGGACTACTCGATCTAATGCTAAGCGTTCCT 1519
Query 1283 ATCAATCTAAGGCCAAAACACATCTCCTCGAAGTCCAACTTGACGCAGTTTTGCATAGAC 1342
| |||||| ||||| || || |||||| || ||| || | |||||||||||| |||
Sbjct 1520 ACCAATCTGAGGCCGCGGCATATAACCTCGATGTTCAATTTAAGGCAGTTTTGCATTGAC 1579
Query 1343 ACTGTGATGACTATTTGGCATTACCATGGAGGTTGCCAAGTTGGAAGAGTGGTTGACAAG 1402
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1580 ACTGTGATGACAATTTGGCACTACCATGGAGGTTGCCAAGTTGGAAGAGTGGTTGACAAG 1639
Query 1403 AATTACAAAGTCTTAGGTATTGATGCCTTAAGGGTCATCGATGGATCCACATTTCTCAAG 1462
||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1640 AATTACAGAGTCTTAGGCATTGATTCCTTAAGGGTCATCGATGGATCCACATTTCTCAAG 1699
Query 1463 TCTCCAGGGACCAATCCACAAGCCACGGTCATGATGCTCGGAAGGTACATGGGGCAAAAG 1522
||||| ||||| ||||| ||||| || || ||||||||||||||||| ||||| |||| |
Sbjct 1700 TCTCCGGGGACTAATCCTCAAGCTACTGTTATGATGCTCGGAAGGTATATGGGCCAAAGG 1759
Query 1523 ATTCTTCGAGAGAG 1536
||||||| ||||||
Sbjct 1760 ATTCTTCAAGAGAG 1773
Score = 377 bits (204), Expect = 1e-103
Identities = 346/413 (84%), Gaps = 15/413 (4%)
Strand=Plus/Plus
Query 11 TATTACGGATTTATGAAAGATGCAACACTAGCACCAACT-TAT-GCTCGCTTCGACTACA 68
|||||| | |||||||||||||||||| ||||||||| | | | ||||| || || ||||
Sbjct 134 TATTACAGTTTTATGAAAGATGCAACATTAGCACCAA-TGT-TCGCTCGGTTTGATTACA 191
Query 69 TAGTCATCGGAGGAGGAACTTCCGGTTGTGCATTAGCCGCAACGCTCTCTCAAAACGCTA 128
|| ||||||||||||| ||||| ||||| || |||||||| ||||| |||||||||||||
Sbjct 192 TAATCATCGGAGGAGGGACTTCGGGTTGCGCGTTAGCCGCGACGCTATCTCAAAACGCTA 251
Query 129 ACGTTTTGGTTCTTGAACGAGGCGGCT-CTCCCTATGATAATCCTGCCGCTACGGATATC 187
|||||||||||||||||| || || | ||||||| || |||||| | || || ||||||
Sbjct 252 GCGTTTTGGTTCTTGAACGCGGTGG-TGCTCCCTACGACAATCCTACGGCAACAGATATC 310
Query 188 GAAAAATTCGCCAACACACTCTTAAACACCA-CACCAAAAGCGTGGTCGCAGCTTTTCAT 246
||||| || |||| |||||||| ||||| || |||| ||| | |||||||| ||||| ||
Sbjct 311 GAAAACTTTGCCACCACACTCTCAAACA-CATCACCGAAATCTTGGTCGCAACTTTTTAT 369
Query 247 ATCCGAGGACGGCGTTTATAACCA-TCGTGCGCGCGTCCTCGGTGGAGACTCGGTGTTGA 305
||||||||||||||||| || || |||||| |||||||||||||| | ||| ||||| |
Sbjct 370 CTCCGAGGACGGCGTTTACAA-CACTCGTGCACGCGTCCTCGGTGGTGGCTCCGTGTTAA 428
Query 306 ACGCTGGGTTTTACTCACGTGC-GGAGGATTATTATGTGGAGAAGTCTGAGTGGGAGA-T 363
|||| ||||| ||| ||||||| ||| ||| | || ||| || || |||||||| ||| |
Sbjct 429 ACGCCGGGTTCTACACACGTGCGGGA-GATGAGTACGTGAAGGAGACTGAGTGGAAGACT 487
Query 364 GGAGGAAGTGGAAGCTGCTTACGAGTGGGTCGAGAAGAAACTTGTGTT-CAAC 415
|| |||||||||||||||||||||||||||||||||||| | | ||| ||||
Sbjct 488 -GATGAAGTGGAAGCTGCTTACGAGTGGGTCGAGAAGAAAGTGGCGTTTCAAC 539
> AT3G56060.1 | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase
family protein | chr3:20803133-20806013 REVERSE LENGTH=1959
Length=1959
Score = 298 bits (161), Expect = 1e-79
Identities = 320/395 (81%), Gaps = 18/395 (5%)
Strand=Plus/Plus
Query 18 GATTTATGAAAGATGCAACACTAGCACC-AACTTATGCTCGCTTCGACTACATAGTCATC 76
|||||||||||||||||||| ||||||| || |||| ||| ||||||||||||| |||||
Sbjct 125 GATTTATGAAAGATGCAACATTAGCACCAAAGTTAT-CTCACTTCGACTACATAATCATC 183
Query 77 GGAGGAGGAACTTCCGGTTGTGCATTAGCCGCAACGCTCTCTCAAAACGCTAAC-GTTTT 135
||||||||||| | || |||||||||||||||||||||||||||||||| ||| ||| |
Sbjct 184 GGAGGAGGAACCGCTGGATGTGCATTAGCCGCAACGCTCTCTCAAAACGC-AACCGTTCT 242
Query 136 GGTTCTTGAACGAGGCGGCTCTCCCT-ATGATAATCCTGCCGCTACGGATATCGAAAAAT 194
|| || ||||| || || || |||| | || |||| || || || || |||| ||| |
Sbjct 243 AGTCCTCGAACGCGGAGGTTC-CCCTTACGACGATCCAGCGGCAACAGACATCGGAAACT 301
Query 195 TCGCCAACACACTCTTAAACACCACACCAAAAGCGTGGTCGCAGCTTTTCATATCCGAGG 254
|||| ||||||||||| |||| || ||||| | ||||||||||||||||| ||||| |
Sbjct 302 TCGCAAACACACTCTTGAACATAACTCCAAACTCATGGTCGCAGCTTTTCATCTCCGAAG 361
Query 255 ACGGCGTTTAT-AAC-CATCGTGCGCGCGTCCTCGGTGGAGACTCGGTGTTGAACGCTGG 312
||||||||| | ||| || || || || || |||||||||| | | || | ||||| ||
Sbjct 362 ACGGCGTTT-TCAACTCA-CGCGCTCGTGTACTCGGTGGAGGCACAGTCATAAACGCAGG 419
Query 313 GTTTTACTCACGTGCGGAGGATTATTAT-GTGGAG-AAGTCTG-AGTGGGAGATG-GAGG 368
|| |||||||||||||| || ||| | |||| | ||| | | | ||||||| | || |
Sbjct 420 ATTCTACTCACGTGCGGAAGAAGATT-TCGTGGCGGAAG-CAGGA-TGGGAGA-GAGACG 475
Query 369 AAGTGGAAGCTGCTTACGAGTGGGTCGAGAAGAAA 403
| || ||||| ||||||||||||||||||||||||
Sbjct 476 AGGTCGAAGCGGCTTACGAGTGGGTCGAGAAGAAA 510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80320872000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5