BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949747
Length=352
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51960.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Complex 1... 499 6e-141
> AT5G51960.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Complex
1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45
proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:21110340-21111348 FORWARD LENGTH=628
Length=628
Score = 499 bits (270), Expect = 6e-141
Identities = 316/338 (93%), Gaps = 3/338 (1%)
Strand=Plus/Plus
Query 11 AAAGAAGAAGATGAGTGGTGAAGTTGTTATAGCTGCTAGAGTATATCGTGGCCTTCTTAA 70
|||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| ||
Sbjct 75 AAAGAAGAAGATGAGTGGTGAAGTTGTTTTAGCTGCTAGAGTTTATCGTGACCTTCTCAA 134
Query 71 AGCAGTGTTGAAACATGTTGGTAAAGAAGATTACAAGTCTCATTTCATT-GACTTTGTTA 129
||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 135 AGCAGTGGTGAAACATGTTGGTAAAGAAGATCACAAGTCTCATTTC-TTAGACTTTGTTA 193
Query 130 AGCAAGAATTCCGGAAGAATGCAAACTCAGAGAATATCAACCTCGCCCGCAATTACACTT 189
|||||||||| || |||||||||||||||||||| || ||||| || || |||||||| |
Sbjct 194 AGCAAGAATTTCGAAAGAATGCAAACTCAGAGAAAATAAACCTTGCTCGAAATTACACAT 253
Query 190 ATCTTCTCAATAGCATTCACTCTCACAAGGATTTGTTGTTCTCATACAACATTGCGGTTG 249
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 254 ATCTTCTCAATAGCATTCACTCTCACAAGGATCTGCTGTTCTCATACAACATTGCGGTTG 313
Query 250 ATAGAACTGAAGAAATGAAACGAGTGCTTAATAAATCTGCAGCTAGTGTAGGGCTTCGTC 309
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 314 ATAGAACTGAAGAAATGAAACGAGTGCTTAATAAATCTGCAGCCAGTGTAGGGCTTCGTC 373
Query 310 TTCCTGAAGTTTACGAGCCTTGATCAGGCAATGCATTC 347
|||||||||||||||||||||||||| ||| | |||||
Sbjct 374 TTCCTGAAGTTTACGAGCCTTGATCATGCATT-CATTC 410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16487821672
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5