BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949748
Length=1136
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51970.1 | Symbols: | GroES-like zinc-binding alcohol dehyd... 1842 0.0
> AT5G51970.1 | Symbols: | GroES-like zinc-binding alcohol dehydrogenase
family protein | chr5:21111445-21113403 FORWARD LENGTH=1589
Length=1589
Score = 1842 bits (997), Expect = 0.0
Identities = 1090/1136 (96%), Gaps = 1/1136 (0%)
Strand=Plus/Plus
Query 1 GAGCATAGTAGAGAAGAGTTATGGGGAAAGGAGGGATGTCTCATGGAGAAGGCTCAAAGG 60
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 356 GAGCATAGCAGAGAAGAGTTATGGGGAAAGGAGGGATGTCTCAAGGAGAAGGCTCAAAGG 415
Query 61 TTGAAGAAGAAAACATGGCTGCTTGGTTGGTTGGTCTCAATACCCTCAAGATCCAACCTT 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 416 TTGAAGAAGAAAACATGGCTGCTTGGTTGGTTGGTATCAATACCCTCAAGATCCAACCTT 475
Query 121 TTCTTCTTCCTTCAGTTGGTCCTCATGATGTGAGAGTTAGGATGAAAGCTGTTGGTATTT 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TTCTTCTTCCTTCCGTTGGTCCTCATGATGTGAGAGTTAGGATGAAAGCTGTTGGTATTT 535
Query 181 GTGGAAGTGATGTTCATTACCTAAAGACCATGAGATGTGCGGATTTTGTGGTGAAAGAAC 240
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 536 GTGGAAGTGATGTTCATTACCTTAAGACCATGAGATGTGCGGATTTTGTGGTGAAAGAGC 595
Query 241 CGATGGTGATTGGACATGAATGTGCTGGGATCATTGAAGAAGTAGGTGAAGAAGTGAAAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CGATGGTGATTGGACATGAATGTGCTGGGATCATTGAAGAAGTAGGTGAAGAAGTGAAAC 655
Query 301 ATTTAGTGGTTGGTGACCGTGTGGCTCTTGAACCTGGGATTAGTTGTTGGAGATGCAATC 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 656 ATTTAGTGGTTGGTGACCGTGTAGCTCTTGAACCTGGGATTAGTTGTTGGAGATGCAATC 715
Query 361 TCTGCAGAGAAGGGCGATACAACCTTTGTCCAGAGATGAAGTTCTTTGCAACTCCACCGG 420
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 716 TCTGCAGGGAAGGACGATACAACCTTTGTCCAGAAATGAAGTTCTTTGCAACTCCACCGG 775
Query 421 TTCACGGCTCTTTAGCTAACCAGGTAGTTCACCCTGCGGATCTATGCTTCAAATTGCCTG 480
|||| ||||||||||||||||| || || ||||||||||| |||||||||||||||||||
Sbjct 776 TTCATGGCTCTTTAGCTAACCAAGTGGTACACCCTGCGGACCTATGCTTCAAATTGCCTG 835
Query 481 ATAATGTGAGTTTGGAGGAAGGAGCAATGTGTGAGCCACTTAGTGTTGGTGTTCATGCGT 540
| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 836 AGAATGTGAGTTTGGAGGAAGGAGCAATGTGTGAACCACTTAGTGTTGGTGTCCATGCTT 895
Query 541 GTCGCCGAGCTGAGGTTGGTCCTGAAACAAGCGTTTTGGTAATGGGAGCTGGACCAATTG 600
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 896 GTCGCCGAGCTGAGGTTGGTCCTGAAACAAACGTTTTGGTAATGGGAGCTGGACCTATTG 955
Query 601 GCCTTGTCACCATGTTAGCTGCTCGGGCTTTCGGTGTGCCTAGAATTGTTATTGTGGATG 660
||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 956 GCCTTGTTACAATGTTGGCTGCTCGGGCTTTCAGTGTGCCTAGAATTGTTATTGTGGATG 1015
Query 661 TTGATGAGAACCGTTTAGCCGTAGCAAAACAGCTTGGTGCAGATGGGATTGTTCAAGTGA 720
|||||||||||||||||||||||||||||||||| || ||||||| |||||| |||||||
Sbjct 1016 TTGATGAGAACCGTTTAGCCGTAGCAAAACAGCTCGGCGCAGATGAGATTGTACAAGTGA 1075
Query 721 CAACAAACTTAGAGGATGTTGGTTCTGAGGTTGAACAAATTCAGAAAACTATGGGCTCAA 780
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||
Sbjct 1076 CAACAAACTTAGAGGATGTTGGTTCTGAGGTTGAACAGATTCAGAAAGCTATGGGGTCAA 1135
Query 781 ACGTCGATGTGACATTCGATTGTGCGGGTTTTAACAAAACCATGTCGACAGCATTAGCAG 840
|| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 ACATCGATGTAACATTCGACTGTGCGGGTTTTAACAAAACCATGTCGACAGCATTAGCAG 1195
Query 841 CCACTCGATGTGGTGGTAAAGTCTGTCTTGTCGGAATGGGTCACGGTATAATGACTGTCC 900
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CCACTCGTTGTGGCGGTAAAGTCTGTCTTGTCGGAATGGGTCACGGTATAATGACTGTCC 1255
Query 901 CTCTCACTCCTGCAGCTGCAAGGGAGGTAGATGTGGTAGGTGTGTTCAGGTACAAGAACA 960
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1256 CTCTCACTCCTGCAGCTGCAAGGGAGGTAGATGTGGTGGGTGTGTTCAGGTACAAGAACA 1315
Query 961 CATGGCCTTTGTGTCTTGAGTTCCTAACAAGTGGTAAGATTGATGTAAAGCCACTCATAA 1020
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1316 CATGGCCATTGTGTCTTGAGTTCCTGACAAGTGGTAAGATTGATGTAAAGCCACTCATAA 1375
Query 1021 CCCACAGATTCGGTTTCTCTCAGAAGGAAGTGGAAGATGCCTTTGAAACCAGTGCCCGTG 1080
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1376 CCCACAGATTCGGTTTCTCTCAAAAGGAAGTGGAAGATGCCTTTGAAACCAGTGCTCGTG 1435
Query 1081 GGAGCAATGCCATCAAAGTTATGTTCAATCTGTGaaaaaaaaTCTTCGCTTTTCTA 1136
||||||||||||||||||||||||||||||| |||||| || |||| |||||||||
Sbjct 1436 GGAGCAATGCCATCAAAGTTATGTTCAATCTCTGAAAACAA-TCTTTGCTTTTCTA 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55722604950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5