BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949750
Length=715
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51990.1 | Symbols: CBF4, DREB1D | C-repeat-binding factor 4... 998 0.0
> AT5G51990.1 | Symbols: CBF4, DREB1D | C-repeat-binding factor
4 | chr5:21117113-21117787 REVERSE LENGTH=675
Length=675
Score = 998 bits (540), Expect = 0.0
Identities = 635/680 (93%), Gaps = 10/680 (1%)
Strand=Plus/Plus
Query 21 ATGAATCCCTTTTACTC-AGCTTTCTCAGACTCGTTTCTCTCAATCTCCGATGACAGATC 79
|||||||| |||||||| | | ||| |||||||||||||||||||||||||| | |||||
Sbjct 1 ATGAATCCATTTTACTCTA-CATTCCCAGACTCGTTTCTCTCAATCTCCGATCATAGATC 59
Query 80 TCCGGTTTCGGACAGTAGTGAGTGTTCACCGAAGTTAGCTTCGAGTTGTCCTAAGAAACG 139
||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 60 TCCGGTTTCAGACAGTAGTGAGTGTTCACCAAAGTTAGCTTCAAGTTGTCCAAAGAAACG 119
Query 140 AGCTGGGAGGAAGAAGTTTCGTGAGACACGTCATCCGATTTACAGAGGAGTTCGTCAGAG 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGCTGGGAGGAAGAAGTTTCGTGAGACACGTCATCCGATTTACAGAGGAGTTCGTCAGAG 179
Query 200 GAATTCTGGTAAATGGGTTTGTGAAGTGAGGGAACCGAATAAGAAATCTAGGATTTGGTT 259
||||||||||||||||||||||||||| || || || |||||||||||||||||||||||
Sbjct 180 GAATTCTGGTAAATGGGTTTGTGAAGTTAGAGAGCCTAATAAGAAATCTAGGATTTGGTT 239
Query 260 AGGTACTTTTCCGACGGTTGAAATGGCTGCTCGTGCTCATGATGTTGCTGCTTTAGCTCT 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGGTACTTTTCCGACGGTTGAAATGGCTGCTCGTGCTCATGATGTTGCTGCTTTAGCTCT 299
Query 320 CCGTGGTCGCTCTGCTTGTCTCAATTTCGCTGATTCGGCTTGGAGGCTTCGTATTCCTGA 379
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 300 TCGTGGTCGCTCTGCTTGTCTCAATTTCGCTGATTCTGCTTGGCGGCTTCGTATTCCTGA 359
Query 380 GACTACTTGTCCTAAGGAGATTCAGAAAGCGGCGGCTGAAGCTGCAATGGCGTTTCAGAA 439
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 360 GACTACTTGTCCTAAGGAGATTCAGAAAGCTGCGTCTGAAGCTGCAATGGCGTTTCAGAA 419
Query 440 TGAGAGTATGAcggagggatctaaaactgcggcggaggtggaggcggaggcggctgggga 499
||||| || ||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct 420 TGAGACTACGACGGAGGGATCTAAAACTGCGGCGGAGGCAGAGG---AGGCGGCAGGGGA 476
Query 500 gggggagagggagagggagaggagggtggaggagcaga--g-TAGTGTGTTTTATATGGA 556
||||| ||||||| |||||||||||| ||||||||||| | | ||||||||||||||||
Sbjct 477 GGGGGTGAGGGAGGGGGAGAGGAGGGCGGAGGAGCAGAATGGTGGTGTGTTTTATATGGA 536
Query 557 TGAAGAGGCGGTTTTGGGGATGCCGACCTTTTTTGAGAATATGGCGGAGGGGATGCTTTT 616
||| |||||| ||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 537 TGATGAGGCGCTTTTGGGGATGCCCAACTTTTTTGAGAATATGGCGGAGGGGATGCTTTT 596
Query 617 GCCGCCGCCGGAAATTGGCTGGAATCATAACGACTTTGACGGAGATGC-TGACGTGTCAC 675
||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||
Sbjct 597 GCCGCCGCCGGAAGTTGGCTGGAATCATAACGACTTTGACGGAG-TGGGTGACGTGTCAC 655
Query 676 TCTGGAGTTTCGACGATTAA 695
|||||||||| ||||| |||
Sbjct 656 TCTGGAGTTTTGACGAGTAA 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34661561430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5