BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949754
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52020.1 | Symbols: | Integrase-type DNA-binding superfamil... 1099 0.0
> AT5G52020.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr5:21123958-21124948 REVERSE LENGTH=991
Length=991
Score = 1099 bits (595), Expect = 0.0
Identities = 684/725 (94%), Gaps = 14/725 (2%)
Strand=Plus/Plus
Query 19 TTATGTCGAATAATAATAATTCTCCGACCACCGTGAATCAAGAAACGACGACGTTTCGTG 78
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 57 TTATGTCGAATAATAATAATTCTCCGACCACCGTGAATCAAGAAACGACGACGTCTCGTG 116
Query 79 AAGTCTCAATCACATTGCCTACTGATCAATCTCCTCAAACCTCACCAGGCTCATCTTCTT 138
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 117 AAGTCTCAATCACATTGCCTACTGATCAATCTCCTCAAACCTCACCAGGATCATCTTCTT 176
Query 139 CTCCTTCACCGAGACCTTCCGGTGGATCCCCGGCGAGAAGAACCCCGACTGGATTATCCG 198
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 177 CTCCTTCACCGAGACCTTCCGGTGGATCACCGGCGAGAAGAACGGCGACTGGATTATCCG 236
Query 199 GAAAACACTCTGTTTTCAGGGGAATTCGACTACGTAACGGAAAATGGGTATCGGAGATTC 258
| || |||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 237 GCAAGCACTCTATTTTCAGGGGGATTCGACTACGTAACGGAAAATGGGTATCGGAGATTA 296
Query 259 GAGAGCCACGTAAAACGACAAGAATATGGCTCGGGACTTACCCGGTACCGGAGATGGCTG 318
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 297 GAGAGCCACGTAAAACGACAAGAATTTGGCTCGGGACTTATCCGGTACCGGAGATGGCTG 356
Query 319 CCGCCGCTTACGACGTGGCGGCGTTAGCTTTAAAAGGACCCGACGCCGTTTTGAATTTTC 378
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CCGCCGCTTACGACGTGGCTGCGTTAGCTTTAAAAGGACCCGACGCCGTTTTGAATTTTC 416
Query 379 CCGGTTTAGCTTTGACTTACGTGGCTCCGGTTTCAAACTCTGCAGCGGATATAAGAGCGG 438
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 417 CTGGTTTAGCTTTGACTTACGTGGCTCCGGTTTCAAACTCTGCTGCGGATATAAGAGCGG 476
Query 439 CTGCTAGTAGAGCAGCGGAGATGAAGCAACCGGATCCGGGTGGGGATGAGAAGGTATTGG 498
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 477 CTGCTAGTAGAGCAGCGGAGATGAAGCAACCGGATCAGGGTGGGGATGAGAAGGTATTGG 536
Query 499 AACCGGGTCAACCCGGgaaaaaagaagaagaagaagaagTGTCGTGT---TCGT-T--G- 551
|||||| ||||||||| ||| | |||||| |||||||||||||||| |||| | |
Sbjct 537 AACCGGTTCAACCCGGCAAAGAGGAAGAATTAGAAGAAGTGTCGTGTAACTCGTGTTCGT 596
Query 552 -G-AGTTTATGGATGAGGAAGCGATGTTGAATATGCCGACTTTGTTGACGGAGATGGCGG 609
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 597 TGGAGTTTATGGATGAGGAAGCGATGTTGAATATGCCGACTTTGTTGACGGAGATGGCTG 656
Query 610 AAGGGATGTTGATGAGTCCACCGAGAATGATGATA-ACTCCGACGGTGGAGGATGATTCG 668
||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||
Sbjct 657 AAGGGATGTTGATGAGTCCACCGAGAATGATGATACA-TCCGACGATGGAAGATGATTCG 715
Query 669 CCGGAGAATCATGAAGGAGATAATCTTTGGAGTTATAAATGAATTCATTTA-GCTG-TCT 726
|||||||||||||||||||||||||||||||||||||||||||| |||| | |||| |||
Sbjct 716 CCGGAGAATCATGAAGGAGATAATCTTTGGAGTTATAAATGAATCCATTGAAGCTGCTCT 775
Query 727 -TTTT 730
||||
Sbjct 776 CTTTT 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35415073635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5