BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949763
Length=854
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52070.1 | Symbols: | Agenet domain-containing protein | ch... 1164 0.0
> AT5G52070.1 | Symbols: | Agenet domain-containing protein |
chr5:21161311-21165025 FORWARD LENGTH=1101
Length=1101
Score = 1164 bits (630), Expect = 0.0
Identities = 783/856 (91%), Gaps = 13/856 (2%)
Strand=Plus/Plus
Query 4 TCTCCTCTTGG--TAAAAAATGACTCAAACCAATTTGCCATTCCAAGTTAATCAAATTGT 61
|||| |||||| ||||||||||||||| ||||||||| |||||| || ||||||||
Sbjct 45 TCTCATCTTGGAAAAAAAAATGACTCAAATCAATTTGCCCTTCCAAATTGGGCAAATTGT 104
Query 62 GGAGGTGAAATCCTTCATCAAAGGATACCGCGGAGCTTGGTTTCGATGCAAGATATTGGA 121
|||||| ||||| || |||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 105 GGAGGTTAAATCTTTTATCAGAGGATACCGTGGAGCTTGGTTTCGATGCAAGATATTGGA 164
Query 122 TATGACCAATGAAAATGGAGAACTAAGATACAAGTTTAAGTATCTTGACTTTCCAGATGA 181
||| | ||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 165 TATAAGCAATGAAAAGGGTGAACTAAGATACAAGTTTAAGTATCTCGACTTTCCAGATGA 224
Query 182 ACCGTTAGATAATGCACTAGTCTTTGAAACACCTAAAGGTGGGACGGAAAGTCAGCTAAT 241
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 225 ACCTTTAGATAATGCACTGGTCTTTGAAACACCTAAAGGTGGGACAGAAAGTCAGCTAAT 284
Query 242 GCTTCGTCCCACATATCCACCACATTATCATGAAAGTGAATATGTTAATCTCGAGGGTG- 300
||||||||| | ||||||||||| ||||| ||||||||||||| ||||||||||| |||
Sbjct 285 GCTTCGTCCAAAATATCCACCACTTTATCTTGAAAGTGAATATCTTAATCTCGAGAGTGA 344
Query 301 --ACGTAGAACCTCTTGTCGTCGTTCATGATTCTTGGAAAGTTGGAGATTTAGTTGATTG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 CAACGTAGAACCTCTTGTCGTCGTTCATGATTCTTGGAAAGTTGGAGATTTAGTTGATTG 404
Query 359 GTTGAGAGATGAGATTTATTGGTCTGGAGAAATTGTGGCAATGAAAGGTAGGAGATCATG 418
|||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||
Sbjct 405 GTTGAGAGATGACATTTATTGGTCTGGAGAAATTGTGGAAATGAGAGGTAGGAGAGCATG 464
Query 419 TCAGATTGAATTGCTACCTAAACCAGA-GGGTGAAGGAGAG-GTTTATCTAGGTTTGTGT 476
|||||| |||||||| ||||||||||| ||| |||||||| ||| ||| ||||||||||
Sbjct 465 TCAGATCGAATTGCTTCCTAAACCAGAAGGG-GAAGGAGATAGTT-ATCAAGGTTTGTGT 522
Query 477 AAGAATTTGCGTCCACGGTTGGATTGGTCAGTGGAAGATGGTTGGAAAGTGCCTTGCTCT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 523 AAGAATTTGCGTCCACGGTTGGATTGGTCAGTGGAAGATGGTTGGAAAGTGCCTTGCACT 582
Query 537 GTGGATGGGCAAAAATCTGCTAAGATCGTGACATCTAAGAATGAAGATGAAGGAATTGCA 596
| ||||||| |||||| |||||||||||||||||||||||| ||||||| ||||||| |
Sbjct 583 GCGGATGGGAAAAAATGTGCTAAGATCGTGACATCTAAGAAAGAAGATGGTGGAATTGGA 642
Query 597 GATGAATGCGAAACTGAAAAAGAGCAAACAAAGAAAGCCACAAAGCAAGTGGAAGGCAAT 656
|||||||| ||||||| |||||||||||| |||||| |||||||||||||||||||||||
Sbjct 643 GATGAATGTGAAACTGCAAAAGAGCAAACGAAGAAAACCACAAAGCAAGTGGAAGGCAAT 702
Query 657 GAAGGTCTTAGGCTTAATATCATGGAATCAGAATC-AATTGAAGCTGCTGTTTTGGACAT 715
|||||||||||||||||||| |||||||| || | ||||||||||||||| ||||||||
Sbjct 703 GAAGGTCTTAGGCTTAATATTATGGAATCGGA-TGGAATTGAAGCTGCTGTGTTGGACAT 761
Query 716 AGAAGAGCTTATTGTTCGACTTGATTGGCTTAAAGGAAAATTAAAGCCGGATGTTGGAGA 775
|||||||||||| |||||| |||||||| ||||||||| |||||||||||||||||||||
Sbjct 762 AGAAGAGCTTATCGTTCGAATTGATTGGTTTAAAGGAATATTAAAGCCGGATGTTGGAGA 821
Query 776 AGGTGCAAAACCTTATTGGAAGTATGAAGATTACCGCCCATCTTCCTCGGGAA-GATGAA 834
|||||||||| || ||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 822 AGGTGCAAAATGTTCTTGGAAGTATGAAGATTACCGCCCATCTTCCTCTGGAATG-TGAA 880
Query 835 TTCGTAATGGTAGTAG 850
||| ||||||||||||
Sbjct 881 TTCATAATGGTAGTAG 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41644107863
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5