BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949767
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52120.1 | Symbols: AtPP2-A14, PP2-A14 | phloem protein 2-A1... 1411 0.0
> AT5G52120.1 | Symbols: AtPP2-A14, PP2-A14 | phloem protein 2-A14
| chr5:21176422-21180310 REVERSE LENGTH=1282
Length=1282
Score = 1411 bits (764), Expect = 0.0
Identities = 863/910 (95%), Gaps = 9/910 (1%)
Strand=Plus/Plus
Query 1 TATCATCCGATCTTT--C-ATCTATGGGGGCGGCTTCATCGAGCATCGCT-GGATCAGAA 56
||||||| |||||| | || |||||||||||||||||||||||||| | |||| |||
Sbjct 145 TATCATCTAATCTTTACCAATATATGGGGGCGGCTTCATCGAGCATCG-TCCGATCCGAA 203
Query 57 CCTTTTGCCGGAAAGTTATGCGGTCTCGAAGATGTGCCTGAGAACTGTGTAACGGCAATG 116
||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||
Sbjct 204 CCTTTTGCCGGAAAGTTATGCGGCCTCGAAGATGTGCCTGAGAACTGTATAACAGCAATG 263
Query 117 TTCATGTACATGGAGCCACCGGAGATCTGCCTACTTGCTAGGGTAAATAAGTCATTTCAT 176
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 264 TTCATGTACATGGAGCCACCGGAGATCTGCCTGCTTGCTAGGGTAAATAAATCATTTCAT 323
Query 177 AGGGCGTCGAGATCCGATGCGGTGTGGGAACACAAGCTTCCTCCTAACTACAAGTTTCTG 236
|||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||
Sbjct 324 AGGGCGTCGAGATCCGATGCCGTGTGGGAAGACAAGCTTCCTAGTAACTACAAGTTTCTG 383
Query 237 GTCCGAAGAATTCTTGAAGATCAACAACAAGTAGGAGAAAAAGAAAAACTTA-TCATCCG 295
||||||||||||||||||||||||||||||||||||| |||||| ||||||| | | |||
Sbjct 384 GTCCGAAGAATTCTTGAAGATCAACAACAAGTAGGAGTAAAAGACAAACTTATTTA-CCG 442
Query 296 CAAGAAAGAGATCTATGCAAGGCTTTGCCGACCAAACCTCTTCGACGCCGGCACAAAGGA 355
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 443 CAAGAAAGAGATCTATGCAAGGCTTTGCCGACCAAACCTCTTCGACACCGGCACAAAGGA 502
Query 356 AGCATGGTTGGACAAGAGAAGTGGGAAAGTGTTTTTGGCGATATCACCAAAGGCAATGAA 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 AGCATGGTTGGACAAGAGAAGTGGGAAAGTGTTTTTGGCGATATCACCAAAGGCAATGAA 562
Query 416 GGTAACCGGCATTGATGATCGCCGATATTGGGAACATATTTCTTCTGACGAATCCAGATT 475
| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 563 GATAACCGGCATTGATGATCGCCGATATTGGGAACATATTTCTTCCGATGAATCCAGATT 622
Query 476 TGGATCTATGGCTTATCTCCGGCAAATATGGTGGTTAGAAGCAGTTGGGAAAATCAGATT 535
|||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 623 TGGATCAATAACTTATCTCCGGCAAATATGGTGGTTAGAAGCAGTTGGAAAAATCAGATT 682
Query 536 CGAATTTTCACCCGGAAAATACAGTTTA-TATTTCAAGATACAATTAGGAAAACCTATTA 594
||||||| |||||||||||||||||||| | |||||||||||||||||| ||||||||||
Sbjct 683 CGAATTTGCACCCGGAAAATACAGTTTACT-TTTCAAGATACAATTAGGCAAACCTATTA 741
Query 595 GAAAGTGTGGGAGGAAAACATATAGTTTGGACCAAGTTCATGGCTGGGATATCAAACCGG 654
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 742 GAAAGTGTGGGAGGAAAACATGTAGTTTGGACCAAGTTCATGGCTGGGACATCAAACCGG 801
Query 655 TCCGGTTTCAATTGTCTACATCGGATGGCCAATGCGCTATGTCGGAACGGCATCTGGACG 714
|||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| |
Sbjct 802 TCCGGTTTCAGTTGTCTACATCGGATGGCCAATGCGCTATGTCGGAACGACATTTGGATG 861
Query 715 AACCGGGGAGGTGGGTTTATCATCACGCGGGTGACTTCGTCGTAGAGAATCAGAACTCAC 774
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 862 AGTCGGGGAGGTGGGTTTATCATCATGCGGGTGACTTCGTCGTAGAGAATCAGAACTCAC 921
Query 775 CCGTTTGGGTCAAATTCTCTATGCTCCAGATAGATTGTACACATACCAAAGGTGGGTTAT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 922 CCGTTTGGGTCAAATTCTCTATGCTCCAGATAGATTGTACACATACCAAAGGTGGTTTAT 981
Query 835 GTTTAGATTGTGTGATCATATGTCCATTTGAGTATATAGGGAAATACAAATATTCCGATT 894
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 982 GTTTAGATTGTGTGATCATATGTCCATTTGAGTATAGAGGGAAATACAAATATTCCGATT 1041
Query 895 AAATGTTTTT 904
||||||||||
Sbjct 1042 AAATGTTTTT 1051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44155815213
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5