BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949768

Length=656
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G52130.1 | Symbols:  | unknown protein; Has 10 Blast hits to...   276    2e-73


> AT5G52130.1 | Symbols:  | unknown protein; Has 10 Blast hits 
to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:21182468-21183875 REVERSE 
LENGTH=492
Length=492

 Score =  276 bits (149),  Expect = 2e-73
 Identities = 288/350 (82%), Gaps = 30/350 (9%)
 Strand=Plus/Plus

Query  153  GTCGCAAGAGAATGGCAAAATATGCAAGATTATTCTCTAATCTCCTTAAGCGATGACGAG  212
            |||||||||||||||||||||||| || |  |||||||||||||||||||||||||||| 
Sbjct  94   GTCGCAAGAGAATGGCAAAATATGGAA-A--ATTCTCTAATCTCCTTAAGCGATGACGAA  150

Query  213  AATTTTGCCAAATCATTACAAGAACAAGAATTGAACCGTTCGTCGTC--CC-ATCAACAA  269
            || ||||| |||||  |||||||||||||||||||||||||| | ||  || | ||||||
Sbjct  151  AAGTTTGCTAAATCGCTACAAGAACAAGAATTGAACCGTTCGACATCTACCCAGCAACAA  210

Query  270  AGTCATGTTCATGGCAGTT-T-CTCAGATGATTCATCTGAC-A--GTTTTCTTTCTCCTC  324
            |||||||||   ||||||| | ||||  ||||||||||||| |  ||  || ||||| ||
Sbjct  211  AGTCATGTT---GGCAGTTCTTCTCA--TGATTCATCTGACGACAGTACTCATTCTCTTC  265

Query  325  CTCCTGATGTTGATAATATGAGTTATGAGGA-ACTGAATCAATTAGGAGAATCGATTGGG  383
            ||||||||||| | | |  || |  |||  | | ||| | | | | |||||||||| || 
Sbjct  266  CTCCTGATGTTAACA-TC-GA-TCCTGATAATA-TGACTTA-TGAAGAGAATCGATCGGA  320

Query  384  GCGGTCAACAAAGGATTGTCGAAGACGAGAATTTGCCAAATACCAACCCATAAATTTCGC  443
            || |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||   
Sbjct  321  GCAGTCAACAAAGGATTGTCGAAGAGGAGAATTGGCCAAATACCAACTCATAAATTT---  377

Query  444  ACTGCCTCGTCGTCTAGAACGA-ACAATCACGTATCCGAAAAAACTCAGT  492
            ||  | |||||||||||||||| | ||||  |||||||||||||||||||
Sbjct  378  AC--C-TCGTCGTCTAGAACGAGA-AATCTTGTATCCGAAAAAACTCAGT  423


 Score =  111 bits (60),  Expect = 6e-24
 Identities = 68/72 (94%), Gaps = 0/72 (0%)
 Strand=Plus/Plus

Query  21  ATGCGTGTGAGGATGCAATCGAATCAGATGGAAATGGATGAAGCCTTTGCGGCATCTTTG  80
           ||||| |||| |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  1   ATGCGAGTGATGATGCAATCGAAACAAATGGAAATGGATGAAGCCTTTGCGGCATCTTTG  60

Query  81  CTGTATGATGAT  92
           ||||||||||||
Sbjct  61  CTGTATGATGAT  72



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31697746757


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5