BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949772

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G52160.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   468    2e-131


> AT5G52160.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr5:21195044-21195763 
FORWARD LENGTH=624
Length=624

 Score =  468 bits (253),  Expect = 2e-131
 Identities = 308/334 (92%), Gaps = 6/334 (2%)
 Strand=Plus/Plus

Query  1    AAAGAT-AAAGAAAGAAGAAGATGGCAGCTTCGTGC-A--ACTCTTCCAAGTCATTCATG  56
            |||||| ||||||||||||||||||||||||||| | |  ||||||||| ||||||||||
Sbjct  76   AAAGATAAAAGAAAGAAGAAGATGGCAGCTTCGTCCAAGTACTCTTCCATGTCATTCATG  135

Query  57   ATGGCGGTAGTGATGGTGGCGCTGGTCCTGGTGGTGGCAGCAACGGTGGTGGATGGACAG  116
            | || || | ||||||||||||||||| ||||||||||||| || |||||||||||||| 
Sbjct  136  AAGGTGGCAATGATGGTGGCGCTGGTCTTGGTGGTGGCAGCCACTGTGGTGGATGGACAA  195

Query  117  AGCTGCAATGCACAGCTGAGTGGACTGAACGTGTGTGGTGAGTTTGTGGTTCCCGGAGCT  176
            ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct  196  AGCTGCAATGCGCAGCTGAGTACACTGAACGTGTGTGGTGAGTTTGTGGTTCCCGGAGCT  255

Query  177  GACAGGACCAACCCGAGTGCTGAGTGTTGCAATGCTCTTGAGGCAGTGCCAAATGAATGC  236
            |||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct  256  GACAGGACCAACCCAAGTGCCGAATGTTGCAATGCTCTTGAGGCAGTGCCAAACGAATGC  315

Query  237  CTTTGCAACACGTTTCGCATTGCCTCTAGGCTTCCCTCTCGTTGCAACATCCCTACACTT  296
            ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  316  CTTTGCAACACGTTTCGCATTGCCTCTAGGCTTCCCTCTCGCTGCAACATTCCTACACTT  375

Query  297  TCATGCAGTTGATATGGATCCTCCCATATAAATT  330
            |||||||||||||||||||||||  |||| ||||
Sbjct  376  TCATGCAGTTGATATGGATCCTC--ATATTAATT  407



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15381931194


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5