BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949774
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52180.1 | Symbols: | LOCATED IN: endomembrane system; EXPR... 2010 0.0
> AT5G52180.1 | Symbols: | LOCATED IN: endomembrane system; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 161AB,
predicted (InterPro:IPR019395); Has 82 Blast hits to 82
proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa
- 47; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes
- 2 (source: NCBI BLink). | chr5:21200055-21201610 REVERSE LENGTH=1556
Length=1556
Score = 2010 bits (1088), Expect = 0.0
Identities = 1309/1414 (93%), Gaps = 22/1414 (2%)
Strand=Plus/Plus
Query 9 AGAGTAAAG-AACAATGCTTGAGCTTCTT-GG-AGCTTACAGGAATCTCACACTTCAAAT 65
||||| ||| |||||||||||||||| || || || |||||||||||| |||||||||||
Sbjct 56 AGAGTGAAGAAACAATGCTTGAGCTT-TTAGGAAG-TTACAGGAATCTAACACTTCAAAT 113
Query 66 CCTATTATCTCTCTTCTTAACCCTAATCCTCTCATTCTTCAGAATCTCAATCATCTTCCT 125
|||| |||||||||||||||| || |||| |||||| ||| ||||||||||||||||||
Sbjct 114 CCTACTATCTCTCTTCTTAACGTTAGTCCTTTCATTCGTCAAAATCTCAATCATCTTCCT 173
Query 126 CCACGGTCTCTGTACCTATACCCAACCTGAAAATCTCAACCAAAACAACGCCGGAAATGG 185
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 174 CCACGGTCTCTGTACCTATATCCAACCTGAAAATCTCAACCAAAACAACACCGGAAATGG 233
Query 186 ACTCAGACCCGCGATTCGACGACCATCTAGTACCGATGATCCAAAGTCCAATGTTGAAGT 245
|||| |||| |||||| ||||||||||||||||||| |||||||| || |||||||||||
Sbjct 234 ACTCCGACCTGCGATTAGACGACCATCTAGTACCGACGATCCAAAATCTAATGTTGAAGT 293
Query 246 AAGAAGAAGAAACAGATCCAAAGATAAATCCGAATTCGACGAAAGCAATGCTCAGATCTT 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CAGAAGAAGAAACAGATCCAAAGATAAATCCGAATTCGACGAAAGCAATGCTCAGATCTT 353
Query 306 TCGAATTAAGCTCGATGAAGACCATCTCAGATCTCAAATGTATTTCACTGAGTACAATTC 365
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 354 TCGAATTAAGCTCGATGAAGATCATCTCAGATCTCGAATGTATTTCACTGAGTACAATTC 413
Query 366 GTTTTTCGTGTTATTGTTCTTAGCTGTTTGTTGCTTTCTTCTTCAGAATTACTTCGG--- 422
| | |||||| ||| |||||||||||||| |||||||||||| | || ||||||||
Sbjct 414 GCTATTCGTGATATCGTTCTTAGCTGTTTCTTGCTTTCTTCTAGATAAGTACTTCGGTAT 473
Query 423 TGTTGAGG---ATAGTCATGGAGTTTTGGGTAATGGATTGATGTTTCCGCTTGTTCTTGG 479
| |||||| |||||||||||||||| |||||||||||||||||||| ||||||| ||
Sbjct 474 TATTGAGGATAATAGTCATGGAGTTTTAAGTAATGGATTGATGTTTCCGATTGTTCTAGG 533
Query 480 GTTTATAGCTTTGTGTAAGGT-TTTCGTTGCTTTGGGGAAGATTTCGATTGAGAGATCTG 538
||||||||||||||||||||| ||| || ||||||||||||||||| |||||||||||||
Sbjct 534 GTTTATAGCTTTGTGTAAGGTGTTT-GTAGCTTTGGGGAAGATTTCTATTGAGAGATCTG 592
Query 539 CTTCGAAGAAATCTGAGAAGAAATTGAGTTTGATTTTTGGTGTTTTAGGGTTTGTGTTTG 598
|||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTTCTAAGGAATCTGAGAAGAGATTGAGTTTGATTTTTGGTGTTTTAGGGTTTGTGTTTG 652
Query 599 GGATTATTATCAGTGCTGGTGTTTTTCCTAAAGGATTTGATTTTCAATTGGGTTCTGTTG 658
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 653 GGATTATAATCAGTGCTGGTGTTTTTCCTAAAGGATTTGATTTTCAATTAGGTTCTGTTG 712
Query 659 ATGCGTTTTGCTGTATTGTGATATCGTTTTCGATGGCTTGTATCGGTGGATTCCTTTATA 718
|||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 713 ATGCGTTTTGTTGCATTGTGATATCGTTTTCGATGGCTTGTATTGGTGGTTTCCTTTATA 772
Query 719 TGCCTGCTGGGAGAAGTGCAAGATCGTTTTGGGTTGGGACTGATCAGATTAGGAGTAATT 778
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 773 TGCCTGCTGGAAGAAGTGCAAGGTCGTTTTGGGTTGGGACTGATCAGATTAGGAGTAATT 832
Query 779 TGTCTATCATTTCTTGTGGATGGTTTGGGAGGATGATTCTCTATGCGAATTATATCGTAT 838
|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 833 TGTCGATCATTTCTTGTGGATGGTTTGGTAGGATGATTCTATATGCGAATTATATCGTAT 892
Query 839 CGGTGTTCACTTCGTTGCTTTGGATTCATCCGTTGGCAGAGATTTTGGTGAAGAGAAGTG 898
|||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 893 CGGTTTTCACTTCGTTGCTTTGGATTCATCCGTTGGCAGAGGTTTTAGTGAAGAGAAGTG 952
Query 899 ATAATGCT--G-CTA---GTAGTAG---GAGTCAGACTGGGTTGGTTGGAAATGTAGGCA 949
| || || | ||| ||||||| |||||||| |||||||||||| ||||||||||
Sbjct 953 GTGATCCTGGGACTAGTGGTAGTAGTCAGAGTCAGAGTGGGTTGGTTGGTAATGTAGGCA 1012
Query 950 TGTTGAGTGATGATTTTGTTAAGTTTCGGGTTTTTTGTTTGTTACTGTCGGGTTTACTGC 1009
|||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |
Sbjct 1013 TGTTGAGTGATGATTTTGCGAAGTTTCGGGTTTTGTGTTTGTTACTTTCGGGTTTACTAC 1072
Query 1010 AAGCGATGGCGGTTCGTCCTAACCTTCAGATGTTTTTGAACGAAGCAGTGCTCTCGTGGT 1069
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 1073 AAGCGATGGCGGTTCGTCCTAACCTTCAGATGTTCTTGAACGAAGCAGTCCTTTCGTGGT 1132
Query 1070 ATCAGAGATTACATGGAAGCAAAACTCCTGATTTGGAGTTTAGTCGGGCAAAGATGTTCC 1129
||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |
Sbjct 1133 ATCAGAGATTACATGGAAGTAAAACTCCTGATTTGGATTTTAGTCGTGCAAAGATGTTTC 1192
Query 1130 TTCACAACCACTACTTATGCCTCGTCGCTCTGCAGTTTTTGGCGCCGTCGGTTCTTGTGA 1189
|||||||||| ||| ||||||| || |||||||||||||||||||| ||||| || ||||
Sbjct 1193 TTCACAACCATTACCTATGCCTTGTTGCTCTGCAGTTTTTGGCGCCTTCGGTGCTAGTGA 1252
Query 1190 TTCTTTTCCTCGGCTTGTCTCAGATTGACTTGAGCTCTTTTGCTGTATCTCAACTGGTAT 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TTCTTTTCCTCGGCTTGTCTCAGATTGACTTGAGCTCTTTTGCTGTATCTCAACTGGTAT 1312
Query 1250 GTGGTTCTTTGCCTTGTAGCGAATTCATTAAACAAGTCGGTTTGTTGATGTCTTGGTGGG 1309
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1313 GTGGTTCTTTGCCTTGTAGCGATTTCATTAAACAAGTTGGTTTGTTGATGTCTTGGTGGG 1372
Query 1310 TGCTCTTTGTTTGGTCGGGTTTTGCTTCAGCGAGTCTTGTTTTTTATCGTCGAGGTGTCT 1369
| || |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1373 TTCTTTTTGTTTGGTCGGGTTTTACTTCAGCGAGTCTTGTTTTCTATCGTCGAGGTGTCT 1432
Query 1370 TGTATGTTTCTTGAGAAGTCTGTAGCTTTTTCCC 1403
||||||||||||||||||||||||||||||||||
Sbjct 1433 TGTATGTTTCTTGAGAAGTCTGTAGCTTTTTCCC 1466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69126150465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5