BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949776
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52200.2 | Symbols: | phosphoprotein phosphatase inhibitors... 861 0.0
> AT5G52200.2 | Symbols: | phosphoprotein phosphatase inhibitors
| chr5:21202549-21204756 REVERSE LENGTH=1006
Length=1006
Score = 861 bits (466), Expect = 0.0
Identities = 542/576 (94%), Gaps = 16/576 (3%)
Strand=Plus/Plus
Query 38 GGGGCGTGTTCAATGGGATGAAGCTAATATAGTGGAGATTGAATCTAACAAACCTGTTAG 97
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 179 GGGGCGTGTTCAATGGGATGAAGCTAATATAGTGGAGATTGAATCGAACAAACCTGTTAG 238
Query 98 GCAGAAGATTACTGAACCAAAGACACCGTACCACCCGATGATTGATGATGATGGTTCTCT 157
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
Sbjct 239 GCAGAAGATTACTGAACCAAAGACACCATACCACCCGATGATGGATGATGATGGTTCTTT 298
Query 158 GTCTCCTAGAGGAAGATCGTTTGATGAATGTGTTGATGATATGCAACGAGCCGAAGAACT 217
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 299 GTCTCCTAGAGGAAGAGCGTTTGATGAATGTGTTGATGATATGCAACGAGCTGAAGAACT 358
Query 218 GA-GAATTGTTCTGAATGATGCAGCAGCTTCTTCCAGTAGACATAGTAGCCAGGGTTCTG 276
|| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 359 GAGGAA-TGTTCTGAATGATGCAGCAGCTTCTTCCAGTAGAAATAGTAGCCAGGGTTCTG 417
Query 277 GTGGTGGTGGCTGGAGCTCGTCTGATGAAGAAGAAG------CAGATCCTATGGATCAAG 330
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 418 GTGGTGGTGGCTGGAGCTCGTCTGATGAAGAAGAAGAAGAAGCAGATCCAATGGATCAAG 477
Query 331 ATGAAGAAGGTTCTGGAAGTGGGAAAAATGAACGTTTCAACGCACACAGAAAAGCACATT 390
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 478 ATGAAGAAGGTTCTGGAAGTGGTAAAAATGAACGTTTCAACGCACACAGAAAAGCACATT 537
Query 391 ACGACGAGTTTCGGAAGGTGAAGGAACTGAGATCCTCAGGGTCGTTCTATGAAGAAGAAG 450
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 538 ACGACGAGTTTCGGAAGGTGAAGGAACTGAGATCCTCAGGGTCATTCTATGAAGAAGAAG 597
Query 451 AGGAAGAGGATGATGGTGCAAAAGGCAGTAAATCAGAGGCAACAAC---CTCGCGACACA 507
||||||||||||||||||||||||| |||||||||||| ||||||| ||| |||||||
Sbjct 598 AGGAAGAGGATGATGGTGCAAAAGGTAGTAAATCAGAGACAACAACAAACTCACGACACA 657
Query 508 CTAAAGGCGAAAACAAAGAGTTAGATGCAGCCACAGCGGTATCAGGGACGTC-T--TCTT 564
||||||||| ||||||||||||||||||| ||| | |||||||||||||||| | ||||
Sbjct 658 CTAAAGGCGGAAACAAAGAGTTAGATGCAACCAAAACGGTATCAGGGACGTCGTCATCTT 717
Query 565 CATCCCC-GAGTTAATATAAA-CCTCTCTGTTCAAT 598
||||||| ||||||||||||| ||| ||||||||||
Sbjct 718 CATCCCCTGAGTTAATATAAAACCTTTCTGTTCAAT 753
Score = 71.3 bits (38), Expect = 1e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1 AGTTGCTGGAGATTTTGAAGATGACCGAACCAAAGAGG 38
||||||||||||||||||||||||||||||||||||||
Sbjct 18 AGTTGCTGGAGATTTTGAAGATGACCGAACCAAAGAGG 55
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28784166231
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5