BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949785
Length=4786
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52290.1 | Symbols: SHOC1 | shortage in chiasmata 1 | chr5:2... 6562 0.0
> AT5G52290.1 | Symbols: SHOC1 | shortage in chiasmata 1 | chr5:21230353-21236554
REVERSE LENGTH=4785
Length=4785
Score = 6562 bits (3553), Expect = 0.0
Identities = 4107/4372 (94%), Gaps = 48/4372 (1%)
Strand=Plus/Plus
Query 401 GGTTAAATATGTTGAATTAGATACTATCTTACAGAACTCAAATGACATCCACCAAAG--G 458
||||||||||| | | ||||| |||| | ||||||||||| ||||| || | || |
Sbjct 456 GGTTAAATATGAGGGGTCAGATATTATCCTGCAGAACTCAAAGGACATTCA--AGAGCAG 513
Query 459 ATTTATTCTGTTGATTACATTTCTTCTGATTACTTCACAGAGAACAATACTTCGGTAGCA 518
||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||
Sbjct 514 ATTTATTCTGTTGATTACATTCCTTCTGATTACTTTACAGAGAACAACACTTCTGTAGCA 573
Query 519 GAAAATGAATGC-TCTAGCAAGAATCAACCATGGTTCAAAGATGCCAGATTTCCCCTTCT 577
|||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 574 GAAAATGAATGCTTC-CGCAAGATTCAACCATGGTTCAAAGATGCCAGATTTCCCCTTCT 632
Query 578 AGAAGTGGATGAAGTAAACTTGAGAGAACTATCGAGCTTATCTACGCTTGATAAAGTATT 637
|||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||
Sbjct 633 AGAAGTGGATGAAGTAAACTTGAGCGAACTATCAAGCTTATCTGTGCTTGATAAAGTATT 692
Query 638 TACTGTTCTTGAAACAATTGAACCCCAAGATAAGAACGCAGCGAGTTCTCTCATTATCAA 697
|||||||||||| || |||||||||||||| | || |||| ||||||||||||||||||
Sbjct 693 TACTGTTCTTGAGACGATTGAACCCCAAGACACTAATGCAGGGAGTTCTCTCATTATCAA 752
Query 698 TTCTAAGGAGCTTATAGGCTCTAAGGGTTATGATCTATTGGATATCCTCTCTACGGATTG 757
||||||||||||||||||||| |||| |||||||||||||||| | ||||||||||||||
Sbjct 753 TTCTAAGGAGCTTATAGGCTCAAAGGATTATGATCTATTGGATGTACTCTCTACGGATTG 812
Query 758 CTATTTGAACAAAAGTGGTCAATCTGATGTGGTGCCAGAGGATGAATTTTCTGAAGTGGA 817
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||
Sbjct 813 CTATTTGAACAAGAGTGGCCAATCTGATGTGGTACCAGAGGATGAATTTTCTGAAATGGA 872
Query 818 TTTAGTGAATATCCTGGAAATATCAAATGCTGAGGAAAACTTTCTGTTTGAACAACAAGG 877
| |||||| |||||||||||||||||||||||||| || ||| || ||
Sbjct 873 TATAGTGACTATCCTGGAAATATCAAATGCTGAGG--AA-------TTT------CAGGG 917
Query 878 AAAGCTGGCTCTCCCAGTAACTTTTGAGGAATTTCAGATCCTGGATGTGGAAATATCTGA 937
|||| ||||| | |||||||||| ||||||||| ||||||||||||||||| || |||||
Sbjct 918 AAAGGTGGCTGTACCAGTAACTTATGAGGAATTCCAGATCCTGGATGTGGATATCTCTGA 977
Query 938 TGTTTTTGATATCTTCCTTTGTCTTCTAAAAGCCATTGAACCAGAAATATGTTATGGGAT 997
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||| || ||
Sbjct 978 TGTTTTTGATATCTTCCTTTGTCTTCAAAAAGCCATTGAACCAGAAATCTGTTACGGTAT 1037
Query 998 GTTTAGTAAAGAGATGAACTTCAAGAATTTCGATGAATTAGTAGTCAGTTCCGAACTTGC 1057
||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1038 GTTCAGTAAAGAGATGAACTTCAAGGATTTCGATGAATTAGTTGTCAGTTCCGAACTTGC 1097
Query 1058 CTTCACAGATGATGCCTTCAAGTCTCTGCCTACTCCTATTTTACATGATTATGAGATGAC 1117
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1098 CTTCACAGATGATGCCTTCAAGTCTTTGCCTACTCCTATTTTACATGATTATGAGATGAC 1157
Query 1118 AAGATCTCTGGATCTCATTTATGAGGATGTTTTGTCAAAGATCAAGCCTCAATCCTTGTC 1177
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 AAGATCTCTGGAGCTCATTTATGAGGATGTTTTGTCAAAGATCAAGCCTCAATCCTTGTC 1217
Query 1178 TGCTTCAAATGACATATACTTGCCCTGGAACCTTCTTGAGGAAAGAAACCACAACCATTG 1237
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1218 TGCCTCAAATGACATATACTTGCCGTGGAACCTTCTTGAGGAAAGAAACCACAACCATTG 1277
Query 1238 TGATTATCCGTTTGAAGAAATAGTTACACTCAACATTGATTTTAAGTGGGAATCTTCAGA 1297
|||||||||||||||||||||||||||| |||||||||||| ||| |||||| |||||||
Sbjct 1278 TGATTATCCGTTTGAAGAAATAGTTACATTCAACATTGATTATAACTGGGAAGCTTCAGA 1337
Query 1298 AGGAGACAAATGGGTTTATGATTTTATATTCTCTGAAGATGCTTTCAGCGAGCCACTTGT 1357
|||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||
Sbjct 1338 AGGAGACAAATGGGTTTATGATTTCATTTTCTCTGAAGATGCTTTCTGCGAGCCACTTGT 1397
Query 1358 AGAGAAATGCACTGAACCTTTCTATGGTATATCTACCCTTGATGAGCATGCTCCTGTTAA 1417
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1398 AGAGAAATGCACTGAACCTTTCTATGGTATATCTAACCTTGATGAGCATGCTCCTGTTAA 1457
Query 1418 TACTTCTCATGGGTTATTGGAAAACCTTTTCCAAAAAACAGGAGCCAGGGATTGTGGAGT 1477
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| |||
Sbjct 1458 TACTTCGCATGGGTTATTGGAAAACCCTTTCCAAAAAACAGGAGCAAGGGATTGTGCAGT 1517
Query 1478 GGATGATAATGCTAAGAAGGCTACGCTGTTGTTCAAATCAATGTCTGCGTTTGATGACTT 1537
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1518 GGATGATAATGCTAAGAAGGCTACGCTGTTGTTCAAATCAATGTCTGCTTTTGATGACTT 1577
Query 1538 AACCTTTTTCATGGATCCTCAGAAGGCTGTGACTGAAGATAATCTCGGGTCTAGAGTCGA 1597
|||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||
Sbjct 1578 AACCTTTTTCATGGATCCGAAGAAGGCTGTGATTGAAGATAATCTCGAGTCTAGAGTCGA 1637
Query 1598 AGCTGCTAAGACGGCCAACCATAAATTTATGTCTATTGACTCGAAGGCTTCATGTATATC 1657
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1638 AGCTGCTAAGACTACCAACCATAAATGTATGTCTATTGACTCGAAGGCTTCATGTAGATC 1697
Query 1658 TGGTGGCATGCACCCAAACCTGAAGACGGAGGAAATGATACTTCACAGTGTGCGCCCTTC 1717
|||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1698 TGGTGGTATGCACCCAAACCCGAAGACAGAGGAAATGATACTTCACAGTGTGCGCCCTTC 1757
Query 1718 AGAAAATATTCTGGTTCTTGTTGGGGACTTTGTGAAGAGCTATTTAACTCTTGTGAAGGA 1777
||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1758 AGAAAATATTCAGGCTCTTGTTGGGGAATTTGTGAAGAGCTATTTAACTCTTGTGAAGGA 1817
Query 1778 TGAATCAGAGAATTTATCAGAAGATAGACTTAAGTTACTCAGCATATCTAAAGGAAAGCT 1837
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1818 TGAATCAGAGAATTTATCAGAAGATAAACTTAAGTTACTCAGCATATCTAAAGGAAAGCT 1877
Query 1838 TATTGACTGCATAAGAAAGGCAAATGTCCGCAACACGCAGTTGGCGGATGATAAGACTTT 1897
||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct 1878 TATTGACTGCATAAGAAAGGCAAATGTCCACAAAACACAGTTGGCGGATGATAAGACTTT 1937
Query 1898 CACGTTTGCATTACTACTAGCAATTAAACAGATGACATGGTATATGTGTTTCTTCGGTAT 1957
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1938 CACGTTTGCATTACTATTAGCAATTAAACAGATGACATGGTATATGTGTTTCTTCGGTAT 1997
Query 1958 CCATGTGGCATATCTCTATCTTAACAAGTTATGTCGAAGCTCAAATCCCATGAAGCTAGG 2017
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1998 CCATGTGGCATATATCTATCTTAACAAGGTATGTCGAAGCTCAAATCCCATGAAGATAGG 2057
Query 2018 ATTGCACACCCTCTACTCAGCAGTTGAAACAGAACACAAATCAGATGAGACAGACGTCAC 2077
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2058 ATTGCACACCCTCTACTCAGCAGTTGAAACAGAACACAAATCAGATGAGACAGACATCAC 2117
Query 2078 AAGATCACATCCATCACTAGCTGTTATCCAGGGGATTTTACATTCAGAATTTGCCCGGGG 2137
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2118 AAGATCACATCCATCACTAGCTGTTATCCAGGGGATTTTACAGTCAGAATTTGCCCGGGG 2177
Query 2138 GAACTCCAAAGCATTACTTTTGGCTGAGAAAGTTTTTTGGTCCTCGCTGAAGAGGCTACT 2197
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2178 GAACTCCAAAGCATTACTTTTGGCTGAGAAAGTGTTTTGGTCCTCGCTGAAGAGGCTACT 2237
Query 2198 GATGTCCATGGGTTTATCTTACAATGAGCTCAACAGTCCCTCCCCAAGTGAAAATCGACC 2257
|||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 2238 GATGTCCATGGGGTTATCTTACAATGACCTCAACAGTCCCTCCCCAAGTGGAAATCGACC 2297
Query 2258 AAATGTTCATGAAGCCACGGGGTTTAAAACCGCAGAACGTGGTTTCCTGCCGATTTCAGA 2317
||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 2298 AAATGTTCATGAAGCCA-------T--------AGAACTTGGTTTCCTGCCGATTTCAGA 2342
Query 2318 CTGTCTAATTATCTCTTACGAGCAAATTTCTCCATCTTTTCCTGTGGAGAATTTCAGCGT 2377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2343 CTGTCTAATTATCTCTTACGAGCAAATTTCTCCATCTTTTCCTGTGGAGAATTTCAGCGT 2402
Query 2378 CATTGTAGAATATGGCGGTCCAAATGCCTCGCCCAAATTTTCTTTTCCTTCTAAGTTGGA 2437
||||||||||||||| ||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 2403 CATTGTAGAATATGGAGGTCCAAATGCCTCGCCCAGATATTCTTTTCCTTCAAAGTTGGA 2462
Query 2438 TTCCTTTCCTGACTTCCATTTCATAAAAGTTGAGATGGATATGTCCAGTGCATGCGGCCA 2497
|||||||||| ||| |||||||||||||| ||| |||||||| ||||||||||||| ||
Sbjct 2463 TTCCTTTCCTTCCTTTCATTTCATAAAAGTGGAGCTGGATATGCCCAGTGCATGCGGGCA 2522
Query 2498 ACTGTGTGCAGGTGTCAAAGTACCTTATAGTCTCAAAATGATAAAGGAAGATGAAGTTGA 2557
||| ||||||||||| | ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 2523 ACTCTGTGCAGGTGTTACAGTACCTTATAGTCTCAAAATGATAAAGGGAGACGAAGTTGA 2582
Query 2558 GACGAAAACTGGCTGGTTGGAAGAAGTGTTGAACTTTGTTCCACTTGAAAGTGTGTGTTA 2617
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2583 GACGAAAACTGGGTGGTTGGAAGAAGTGTTGAACTTTGTTCCACTTGAAAAAGTGTGTTA 2642
Query 2618 TGCAGGATCTTCAGTAACCACAAATGAATCTGAATATATCTCCATGCCTCAAGAATCTGA 2677
|||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2643 TGCAGGATCTTCCGAAACCACAAATGAATCTGAATTTATCTCCATGCCTCAAGAATCTGA 2702
Query 2678 AAGAAAACGTGGGATAATTGAACAAGGAGTTCTCTCTGACCAAAGATCTGTGATTGTTGT 2737
||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 2703 AAGAAAACGTGGGATAATTGAAC-AGG-G-TCTCTCTGACCAAAGATCTGTGATTGTTGT 2759
Query 2738 GAATTCAAAAACTGTTGATAAGGAGATGATCATATCCAGAAGAAGTACATACCAGAAGGT 2797
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2760 GAACACAAAAACTGTCGATAAGGAGATGATCATATCCAGAAGAAGTACATACCAGAAGGT 2819
Query 2798 GTTAGCAATGGAAAAAGAAGGAGTGCAAGTTGTGGAGCGCGATTCAGATCTACCTGTGGA 2857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2820 GTTAGCAATGGAAAAAGAAGGAGTGCAAGTTGTGGAGCGCGATTCAGATCTACCTGTGGA 2879
Query 2858 CCTGATGCTAAGTCCTGCAGTTTGCCTACTCTGGTATGATTGTGAAACTGTTAGTAAGAA 2917
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2880 CCTGATGTTAAGTCCTGCAGTTTGCCTACTCTGGTATGATAGTGAAACTGTTAGTAAGAA 2939
Query 2918 GTCGGCTGCAACTATTGGTACTTCCTCAAGCTCACTTTCATGGATTGGAGATATCGCAAC 2977
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2940 GTCGGCTGCAACTATTGGTACTTCCTCAAGTTCACTTTCATGGATTGGAGATATCGCAAC 2999
Query 2978 CAATGTTTTGACGTCATTGAGTTTCAGTTTCAGCACCTGCATTATGGTTTTTGAGGGGGA 3037
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3000 TAATGTTTTGACGTCATTGAGTTTCAGTTTCAGCACTTGCATTATGGTTTTTGAGGGGGA 3059
Query 3038 ACCCGCCTTTCTGGCTACAATAATGGACTCCTCTGATGAACTGTATGTAGCAGCTGGTAG 3097
||||||||| |||||| | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 3060 ACCCGCCTTCCTGGCTGCCGTAATGGACTCCTCTGATGAACTGTATGCAGCAGCTGGTAG 3119
Query 3098 CCTGGGAATCAGTTTACAGATGTTTTGCTCATCGTCAGCTGATTTCACGGATGAAATTAT 3157
||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 3120 CCTAGGAATCAGTTTACAGATGTTTTGCTCATCGTCAGCTAATCTCACGGATGAAATTAT 3179
Query 3158 ATTGAGGTGTATCAAGTCGTCTGTTAAGTTGTCCAAACTCCATGTCAAAATGCCCGAGTC 3217
||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 3180 ATTGAAGTGTATCAAATCTTCTGTTAAGTTGTCCAAACTCCATGTCAAAATGCCCGAGTC 3239
Query 3218 AGAATCTCTAGCAGAATCATTTCTCACCAAGTTTCCTTCCGTGAATCCACTCACAGCTCA 3277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3240 AGAATCTCTAGCAGAATCATTTCTCACCAAGTTTCCTTCCGTGAATCCACTCACAGCTCA 3299
Query 3278 AGTAATTCTGTCATCTTCTGGGTCACTTCTCGAATTCATGAAGCTCCCACATAAAAGCAA 3337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3300 AGTAATTCTGTCATCTTCTGGGTCACTTCTCGAATTCATGAAGCTCCCACATAAAAGCAA 3359
Query 3338 GGTTGATAGGATGCAAAAGTATCATGTACCTGAAGAGAGTGTTGATCTATTCAGTTCACT 3397
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3360 GGTTGAAAGGACGCAAAAGTATCATGTACCTGAAGAGAGTGTTGATCTATTCAGTTCAGT 3419
Query 3398 ATGCAGATACGGAGCGAGGGAGGACTCCAGATCTGTAATGACAGACAGCTCTTCTTCGGT 3457
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3420 ATGCAGATACGGAGCAAGGGAGGACTCCAGATCTGTAATGACAGACAGCTCTTCTTCGGT 3479
Query 3458 ATCTTCTGGACCTGACTCAGACACACACCATGTCAGTGTCCATTCTGGTTCGAAAAAGAA 3517
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 3480 ATCTTCTGGACCTGACTCAGACACACACCATGTCAGTGTCCATTCTGGCTCAAAAAAGAA 3539
Query 3518 ACAGTACATTGCTGAGAAAGATGAGATAGATATGGACGACTTGGTCCATTTTGCTCCCTC 3577
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 3540 ACAGTACATTGCTGAGAAAGATGAGATAGATATGGACGACTTGGTGCATTTTTCTCCCTC 3599
Query 3578 CACAGAATTTGCTGATGCGCAGCTCAAGTCTTCTGGTGATTTTCAACTTGATGATTCTTG 3637
| ||||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 3600 GATAGAATTTGCTGATACACAGCTCAAGTCTTCTGGGGATTTCCAACTTGATGATTCTTG 3659
Query 3638 GTCATCGAGAGATAATGAGATATTTCATTTTGACCCTGTCACTGAATTCTCTGATGCACC 3697
|||||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 3660 GTCATCGAAAGATCATGAGATCTTTCATTTTGACCCTGTCACTGAATTCTCAGATGCACC 3719
Query 3698 TTTCAAGCCTTCTGGGATCAGTCATCCCAATGACTCTTGGCCATCTAAAGATCCTGAGAG 3757
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3720 TTTCAAACCTTCTGGGATCAGTCATCCCAATGACTCTTGGCCGTCTAAAGATCCTGAGAG 3779
Query 3758 ATTCGACAAGAAGCCAAGACCTGGTTCATCATCAAAGGACACATTTTGGGAGAAAGATCA 3817
||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3780 ATTTGACAAGAAGTCAGGACCTGGTTCATCATCAAAGGACACATTTTGGGAGAAAGATCA 3839
Query 3818 GCCTGGTTTTTCAGTGGAGGACAGTCTTCCTGGAATTCCTGAATTAGAAGATTGGAGTTT 3877
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3840 GCCTGATTTTTCAGTGGAGGACAGTCTTCCTGGAATTCCTGAATTAGAAGATTGGAGTTT 3899
Query 3878 CCCAGTTAAAGACAAGTTCAAGAGCCAGAACAGAGGATGTAAATTCCCAGTGATGGGAGA 3937
||||||||||||||| |||| |||||||||||||||||||||||| || |||||| ||||
Sbjct 3900 CCCAGTTAAAGACAAATTCATGAGCCAGAACAGAGGATGTAAATTTCCGGTGATGAGAGA 3959
Query 3938 TTTCAACTTGCATGACAATAGGAACTCAGAGAGTTTCATCGTAGACTACAAAGGTGAAGT 3997
||| ||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||
Sbjct 3960 TTTTAACTTGCATGACAATAGGAACTCGGAGAATTTCATCGCAGACTACAAAGGTGAAGT 4019
Query 3998 AATCAACAGAGCTGATAAATTTCTGGAGGAAGACTTCCCGCCTTCTCCTGGTTACAATAG 4057
||| ||||||||||||| | ||| ||||||||||||||||||||||||||||| |||||
Sbjct 4020 AATTGACAGAGCTGATAAGTATCTCGAGGAAGACTTCCCGCCTTCTCCTGGTTATAATAG 4079
Query 4058 GTTTTCTCCAATAGTTTCTGATGTTGATGAAGAGGAACTTCCAAGAAAATCAAAATCTGC 4117
|||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 4080 GTTTGCTCGAATAGTTTCTGATGTTAATGAAGAGGAACTTCCAAGAAAATCAAAATCTTC 4139
Query 4118 AAGGAAGTTATCTTTCTTTGGATCTCTCCAGCCTAACTTCCCAAAAGCAGCTGAGATCGA 4177
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 4140 AAGGAAGTTATCTTTCTTTGGATCTCTCCAGCCTAACTTCCCAAAGGCGGCTGACATCGA 4199
Query 4178 CTTGAGTTCTGAAAGATTCACCACCGAGAAAGATTCAAAATATGATAACAATGCTTCTTT 4237
|| |||||||||||||| | |||| |||||||||||||||||||||||||| |||||||
Sbjct 4200 CTCGAGTTCTGAAAGATACGCCACTGAGAAAGATTCAAAATATGATAACAACACTTCTTT 4259
Query 4238 GCGTGGTTATGCTGATAACTATCCAGCAAAACGCCAAAGAACCCTTTTGGAGGAGGTCTT 4297
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 4260 GCGTGGCTATGCTGATAACTATCCAGCAAAACGCCAAAGGACCCTTTTGGAGGAGGTCTT 4319
Query 4298 AACTCGGAGATCCGCAGTTCCAACAACAGAGCTTCCATTTAGAGAAGAGATATCACATTT 4357
||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 4320 AACACGAAGATCTGCAGTTCCAACAACAGAGCTTCCATTTAGAGAAGAAATATCACATTT 4379
Query 4358 TGGTGGATCTCCACTATCAAACGCAATCCGTTCTTCAAATCAAGTACAGAGTTCTCCTTG 4417
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 4380 TGGTGGATCTCCACTATCAAACGCAATCCGTTCTTCAAATCAAGTACAAAGTTCTCCTTG 4439
Query 4418 GACGGTTGATTTCCTTAACAGAGTTAGAGAAAGAAGCAGGGCAAGGAAACAACATCAATC 4477
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct 4440 GACGGTTGATTTCCTTAACAGAGTTCGAGAAAGAAGCAGAGCAAGGAAACAACAACAATC 4499
Query 4478 TCTTCCTTCTTATG-TCACTCC-CTCTAGTTTGGAGACTCCAGGGAACATAAAGAAAGCT 4535
|||||||||||||| | |||| | |||||||||||||||||||||||||||||||||||
Sbjct 4500 TCTTCCTTCTTATGCTT-CTCCAC-CTAGTTTGGAGACTCCAGGGAACATAAAGAAAGCT 4557
Query 4536 AGTACCAAGAGAAAGAGTCCTTCCATACTAGAGTTTTTCAAGTATAAAGGAGGCaaaaaa 4595
| |||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 4558 AATACCAAGAGAAAGAGTCCATCCATACTCGAGTTTTTCAAGTATAAAGGAGGCAACAAA 4617
Query 4596 attccagaagagaaaaagcagaagcggtcaaa-aacttcttcagcctcgccaaaaaaCGA 4654
||| ||||||||| | ||||||||||||||| || |||||||||||| |||||||||||
Sbjct 4618 CTTCAAGAAGAGAAGAGGCAGAAGCGGTCAAAGAA-TTCTTCAGCCTCACCAAAAAACGA 4676
Query 4655 GAGATTTTACTCTCCTCTTAAGTCATGGACACCAATTGATAAGCGAGCAAAACAGTCTCT 4714
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 4677 GAGATTTTACTCGCCTCTTAAGTCATGCACACCAATTGATAAGCGAGCAAAACAGTCTCT 4736
Query 4715 ATCTTACGCAGGGAATGGAACTGGAGGCCAAACAAAACTGGTATGGAAGTAA 4766
||||||| ||| |||||||||||| |||||||||||| ||||||||||||
Sbjct 4737 ATCTTACACAGCGAATGGAACTGG---CCAAACAAAACTTGTATGGAAGTAA 4785
Score = 496 bits (268), Expect = 1e-138
Identities = 346/384 (90%), Gaps = 4/384 (1%)
Strand=Plus/Plus
Query 21 ATGCGAACTCGATTTCTCAACATCGATTACTTCTCTACTCCATCTTCTCAGGTATTTGAA 80
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1 ATGCGAACTCGATTTCTCAACATCGATTACTTCTCTACTCCACCTTCTCACGTATTTGAA 60
Query 81 ACCCTAGGCTTCCTTAATCTTCCGGCTCCTGATAATTTTCCGGGACCTATAGTCTACGAC 140
|||||||||||||| ||||||||||||||||||||||| |||| ||| || |||||| ||
Sbjct 61 ACCCTAGGCTTCCTCAATCTTCCGGCTCCTGATAATTTCCCGGCACCCATCGTCTACAAC 120
Query 141 GGAGAAGAAGACCGTCTCCGATTTGGCTCTG-TCGAAAATGTCT-GTCTCCCAATCGGGA 198
||||||||||||||||||||||||||||| | |||||||||| | || |||| ||||| |
Sbjct 121 GGAGAAGAAGACCGTCTCCGATTTGGCTC-GATCGAAAATGT-TAGTATCCCTATCGGAA 178
Query 199 ATTTTACTATTGAAGCTGCTTTGTCGAAGTTCCTTTCCGACGTGGTTCCCGATTGCGTTA 258
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 179 ATTTGCCTATTGAAGCTGCTTTGTCGAAGTTCCTTTCCGACGTGGTTCCCGACCGCGTCA 238
Query 259 GTGTGGACTATGGAGTTTTTGAAATTGATGATTCTTCCCTCGGAGATTATTTCTCAGACG 318
||||||||||| ||||||||||||| || || ||||| ||||||| ||||| ||||||||
Sbjct 239 GTGTGGACTATCGAGTTTTTGAAATCGACGACTCTTCGCTCGGAGTTTATTACTCAGACG 298
Query 319 AGAAGAATGACGGAGATGCCATTGAGGACAAAGCTGTATTTAACATTATGGAGTTGGAGA 378
||||| |||||||||||||||||| ||| |||||| | ||| ||||| ||||||||||
Sbjct 299 AGAAGGATGACGGAGATGCCATTGCGGATAAAGCTACACCTAAAATTATTGAGTTGGAGA 358
Query 379 CTCCGGAGTTGGATTTTGAAATGG 402
|||| |||||||||||||| ||||
Sbjct 359 CTCCAGAGTTGGATTTTGAGATGG 382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 238744481737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5