BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949787
Length=2370
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52310.1 | Symbols: COR78, LTI78, RD29A, LTI140 | low-temper... 1085 0.0
AT5G52300.1 | Symbols: RD29B, LTI65 | CAP160 protein | chr5:212... 361 2e-98
AT4G25580.1 | Symbols: | CAP160 protein | chr4:13056184-130588... 52.8 1e-05
> AT5G52310.1 | Symbols: COR78, LTI78, RD29A, LTI140 | low-temperature-responsive
protein 78 (LTI78) / desiccation-responsive
protein 29A (RD29A) | chr5:21240849-21243613 FORWARD LENGTH=2500
Length=2500
Score = 1085 bits (587), Expect = 0.0
Identities = 712/771 (92%), Gaps = 14/771 (2%)
Strand=Plus/Plus
Query 1603 GAGACTCATGATCAATTCTCACCGGAACTATCTCGTCCTAAAGAGAA-AGATGAGTTTAA 1661
||||||| ||||||||||||||||||||| |||| ||||||||| || ||||||||||||
Sbjct 1473 GAGACTCTTGATCAATTCTCACCGGAACTTTCTCATCCTAAAGA-AAGAGATGAGTTTAA 1531
Query 1662 GGAGTCCAGAGATGATTTTGAGGAGACGAGAGATGAGAAAACAGAGGAGCCAAAA-ACGA 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1532 GGAGTCCAGAGATGATTTTGAGGAGACGAGAGATGAGAAAACAGAGGAGCCAAAACA-GA 1590
Query 1721 CCACTTACACAGAGAAGTTTGCTTCAATGCTAGGTTACTCCGGAGAGATTCCGGTGGGAG 1780
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1591 GCACTTACACAGAGAAGTTTGCTTCAATGCTAGGTTACTCCGGAGAAATTCCGGTGGGAG 1650
Query 1781 ATCAAAGTGAAGTGACGGGAACTGTTGATGAGAAGTTGACACCTGTCAATGAGAAGGATC 1840
|||||| | ||||| ||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1651 ATCAAACTCAAGTGGCGGGAACTGTTGATGAGAAGTTGACTCCGGTCAATGAGAAGGATC 1710
Query 1841 AAGAAACAGAGTCTGCCTTGACGACGAAGTTACCTCTCTCTGGAGGTGGAAGTGGAGCGG 1900
||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| |
Sbjct 1711 AAGAAACAGAGTCTGCCGTGACGACGAAGTTACCTATCTCCGGAGGTGGAAGTGGAGTAG 1770
Query 1901 AGGAGCAACGAGGGGAAGATAAAAATGTGTCGGGTAGAGATTATCCGGCGGAGAAACTGA 1960
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1771 AGGAGCAACGAGGGGAAGATAAAAGTGTGTCGGGTAGAGATTATGTGGCGGAGAAACTGA 1830
Query 1961 CGCCTGAAGAAGAAGACAAAGCTTTTTCTGAGATGATTGCTGAGAAGCTTCAGATTGGAG 2020
| ||||||||||||||||||| |||||||| ||| |||| ||||| |||||||||||||
Sbjct 1831 CAACTGAAGAAGAAGACAAAGCCTTTTCTGATATGGTTGCCGAGAAACTTCAGATTGGAG 1890
Query 2021 GAGGAGAAGAGAAGAAG-ACAACGACGACAAAGGAAGTGGAGAAGATCCCTACCGAGAAG 2079
||| ||||||||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct 1891 GAGAAGAAGAGAAGAAGGA-AACGACGACAAAGGAAGTGGAGAAGATCTCTACCGAGAAG 1949
Query 2080 AC-GTCggaggagggagaacaaggtgaggcggtggatgaggaagtgaaaggaggaggagg 2138
| | | ||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 1950 GCAG-CATCGGAGG-AG-----GGTGAGGCGGTGGAAGAGGAAGTGAAAGGAGGAGGAGG 2002
Query 2139 aatggttgggaggaTTAAAGGATGGTTTGGTGGTGCTGCGACGGAGGAGGTGAAGCCAAA 2198
||||||||||||||||||||||||||| ||||||| |||||| || |||||||||||| |
Sbjct 2003 AATGGTTGGGAGGATTAAAGGATGGTTCGGTGGTGGTGCGACTGATGAGGTGAAGCCAGA 2062
Query 2199 ATCGCCACATTCTGTTGAAGAGGCTCCAAAAACATCCGGCTTGTTTGGTGGTGGTGCGAC 2258
||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct 2063 ATCGCCACATTCTGTTGAAGAGGCTCCAAAATCATCTGGCTGGTTTGGTGGTGGTGCGAC 2122
Query 2259 GGAGGAGGTGAAGCCGAAATCGCCACATTCCGTTGAAGAGTCTCCACAATCACTTGGCTC 2318
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2123 GGAGGAGGTGAAGCCAAAATCGCCTCATTCCGTTGAAGAGTCTCCACAATCACTTGGCTC 2182
Query 2319 AACCGTTGTTCCGGTGCATAAGGAGCTTTAAGAATATGAGAACTGAGATTT 2369
|| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2183 CACTGTTGTTCCGGTGCAGAAGGAGCTTTAAGAATATGAGAACTGAGATTT 2233
Score = 555 bits (300), Expect = 9e-157
Identities = 414/465 (89%), Gaps = 23/465 (5%)
Strand=Plus/Plus
Query 1140 GGGCTTCGGTGGCGAATCAGGAGTTGAGCTAGAAAAAGATTTTAAGACGAGAAGCCATGA 1199
|||||| |||| ||| ||||||| |||||| |||||||||||| ||||||||| |||||
Sbjct 992 GGGCTTTGGTGACGAGTCAGGAGCTGAGCTGGAAAAAGATTTTCCGACGAGAAGTCATGA 1051
Query 1200 TTTTGATATGAAGACTGAAGCTGGAACGGACACGAATTCTCCATCAAGAAGCTATGAGTT 1259
||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| ||
Sbjct 1052 TTTTGATATGAAGACTGAAACTGGAATGGACACGAATTCTCCATCAAGAAGCCATGAATT 1111
Query 1260 TGATCTGAAGACAGAATCTGGAAACGACAAGAATTCTCCGCTGGGATTTGGTAGTGAATC 1319
|||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1112 TGATCTGAAGACTGAATCTGGAAACGACAAGAATTCTCCGATGGGCTTTGGTAGTGAATC 1171
Query 1320 AGGAGCTGAGCTGGGGAGAGAATTGCCGACGGGAAGTGATGAATTTGATCAGAAGATTGA 1379
|||||||||||| | | | | || | |||||||||||||||| ||
Sbjct 1172 AGGAGCTGAGCT-----G-G-A------A----AA---A-GAATTTGATCAGAAGAACGA 1210
Query 1380 ATCTGGAAGAAACGAGTATTCGCCGGAATCTGACGGCGGATTAGGAGCTCCGTTGGGAGG 1439
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1211 TTCTGGAAGAAACGAGTATTCGCCGGAATCTGACGGCGGTTTAGGAGCTCCGTTGGGAGG 1270
Query 1440 AAATTTTCCGGTGAGAAGTCATGAGTTGGATCTGAAGAACGAATCTGGTATCGACAAAAA 1499
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1271 AAATTTTCCGGTGAGAAGTCATGAGTTGGATCTGAAGAACGAATCTGATATCGACAAGGA 1330
Query 1500 T-TCGCCGACGGGATTTGACGGGGAACCAGATTTTCTGGCGAAGGGGAGACCTGGATACG 1558
| | |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1331 TGT-GCCGACGGGATTTGACGGAGAACCAGATTTTCTGGCGAAGGGAAGACCTGGATACG 1389
Query 1559 GCGAGGCATCAGAAGAGGATAACTTTTCGGCGAAAAGTGATGATG 1603
| |||||||||||||||||||| ||| |||||| |||||||||||
Sbjct 1390 GTGAGGCATCAGAAGAGGATAAATTTCCGGCGAGAAGTGATGATG 1434
Score = 520 bits (281), Expect = 3e-146
Identities = 415/475 (87%), Gaps = 28/475 (6%)
Strand=Plus/Plus
Query 1 AAAGaaaaaaaTCTTTGGCAGATGGATCAAACCGCGGAACCACCACTCAACACACACCAG 60
|||||||||||||||||| | ||||||||||| | |||||||||||||||||||||||||
Sbjct 60 AAAGAAAAAAATCTTTGGAAAATGGATCAAACAGAGGAACCACCACTCAACACACACCAG 119
Query 61 CAGCAACCAGAAGAAGTTGAACATCGTGAGAATGGTGCGTCTAAGATGTTTAGGAAAGTA 120
||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 120 CAGCACCCAGAAGAAGTTGAACATCATGAGAATGGTGCGACTAAGATGTTTAGGAAAGTA 179
Query 121 AAGGCAAGAGCTAAGAAGTTCAAGAACAGTATTACTAAACATG-ATCAAAGCAATGAGCT 179
||||| |||||||||||||||||||||||| | |||||||||| | |||||||||||||
Sbjct 180 AAGGCTAGAGCTAAGAAGTTCAAGAACAGTCTCACTAAACATGGA-CAAAGCAATGAGCA 238
Query 180 TGA------TCATGATGTAGTTGAAGAAGATGATGAAGATGACGAGCTAGAACCAGAAGA 233
||| ||||||| | ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 239 TGAGCAAGATCATGATTTGGTTGAAGAAGATGATGATGATGACGAGCTAGAACCTGAAGT 298
Query 234 GATCGATGCACCAGGTGTAAAAGGTAAACCAGAGTCTCTGAGTCATCCGAGAGAAACTAA 293
||||||||||||||| |||| ||||||||| | || | || | | ||||
Sbjct 299 GATCGATGCACCAGGCGTAACAGGTAAACC----T-----AG--A---GA-A-A--CTAA 340
Query 294 TGTTCCGGCAGCGGAGGAGATTGTTCCTCCAGGGACAAAGGTGTTTCCTGTCGTGTCTTC 353
|||||| ||| ||||||| ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 341 TGTTCCAGCATCGGAGGAAATTATTCCACCAGGGACAAAGGTGTTTCCTGTCGTGTCTTC 400
Query 354 CGATTACACCAAACCCACTGAATCTGTACCA-TCACAGGATACCTCTTACGGACACGATG 412
||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||
Sbjct 401 CGATTACACCAAACCCACTGAATCTGTACCAGT-ACAAGAGGCCTCTTACGGACACGATG 459
Query 413 CACCGGCTCATTCTGTAAGAACGACGGATACATCGGGCAAGGAAGAGAGCAGAGA 467
||||||||||||||||||| |||||| |||||||| ||||||||||| |||||
Sbjct 460 CACCGGCTCATTCTGTAAGGACGACGTTTACATCGGACAAGGAAGAGAAAAGAGA 514
Score = 414 bits (224), Expect = 2e-114
Identities = 378/446 (85%), Gaps = 35/446 (8%)
Strand=Plus/Plus
Query 454 GAAGAGAGCAGAGAGGCTCATCACGAGGCAATGGACA---C--TC-CTCTGCTTTCTGCG 507
|||||||| |||||| ||||||| ||| || || ||| | || |||||||||||| |
Sbjct 555 GAAGAGAGTAGAGAGACTCATCATGAGTCATTGAACACTCCGGTCTCTCTGCTTTCTG-G 613
Query 508 -ACAGAGGATATCACGAGGACGTTTGCTCC-TGCTGGTGAAGATGATTATCTTGATGGTC 565
||||||||| | ||||| ||||||||||| | |||||| ||||| |||||||||||||
Sbjct 614 AACAGAGGATGTAACGAGTACGTTTGCTCCAAG-TGGTGATGATGAATATCTTGATGGTC 672
Query 566 AACGGAAAGTCAACGGCGAGACACCGATCAA-GTTGGAGGAAGA-TCCGGCTCTTACAGG 623
||||||| ||||||| |||||| ||||| || |||||||||||| | ||||| || |
Sbjct 673 AACGGAAGGTCAACGTCGAGACCCCGAT-AACGTTGGAGGAAGAGT-CGGCTGTTTC--- 727
Query 624 AGGAGGTTCTGATTATCTTAGTGGTGCATCTAATTATCAGTCCAAAGTTACTGATCCCAC 683
| || | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 728 A-GA----C----TATCTTAGTGGTGTATCTAATTATCAGTCCAAAGTTACTGATCCCAC 778
Query 684 CAAAGAAGGAAGTGGAGAAGCTAGAGTACCGGAGATTACTGAGTCTCTTGGTAATATGAA 743
|||||||| || | | | || |||||||||||||| |||||||| ||||||||||| |
Sbjct 779 CAAAGAAGAAACT-G-G-AG---GAGTACCGGAGATTGCTGAGTCTTTTGGTAATATGGA 832
Query 744 AGTGACTGATGAGTCTCCTGATCAGAAACAAGCACAAGGATTTGAAAGAGACTTGTCGAC 803
||||||||||||||||||||||||||| | || || | |||||||||||||||||||||
Sbjct 833 AGTGACTGATGAGTCTCCTGATCAGAAGCCAGGAC-A--ATTTGAAAGAGACTTGTCGAC 889
Query 804 GAGAAGCAAAGAATTCAAAGAATTTGATCAGGACTTCGACTCTGTTCCCAGCAAGGATTC 863
||||||||||||||||||||| |||||||||||||| |||||||||| | | ||||||||
Sbjct 890 GAGAAGCAAAGAATTCAAAGAGTTTGATCAGGACTTTGACTCTGTTCTCGGTAAGGATTC 949
Query 864 GCCGGTGAAATTTGCAGGTGAATCAG 889
||||| ||||||| ||||||||||||
Sbjct 950 GCCGGCGAAATTTCCAGGTGAATCAG 975
Score = 100 bits (54), Expect = 5e-20
Identities = 62/66 (94%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 2161 TGGTTTGGTGGTGCTGCGACGGAGGAGGTGAAGCCAAAATCGCCACATTCTGTTGAAGAG 2220
||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2103 TGGTTTGGTGGTGGTGCGACGGAGGAGGTGAAGCCAAAATCGCCTCATTCCGTTGAAGAG 2162
Query 2221 GCTCCA 2226
|||||
Sbjct 2163 TCTCCA 2168
> AT5G52300.1 | Symbols: RD29B, LTI65 | CAP160 protein | chr5:21237056-21239529
FORWARD LENGTH=2134
Length=2134
Score = 361 bits (195), Expect = 2e-98
Identities = 318/373 (85%), Gaps = 26/373 (7%)
Strand=Plus/Plus
Query 452 AGGAAGAGAGCAGAGAGGCTCATCACGAGGCAATGGACACT-C-----CTCTGCTTTCTG 505
||| ||||||||||||||||||||| ||| || || ||||| | |||||||||| |
Sbjct 683 AGG-AGAGAGCAGAGAGGCTCATCAAGAGCCATTGAACACTCCTGTGTCTCTGCTTTCAG 741
Query 506 CGACAGAGGATATCACGAGGACGTTTGCTCCTGCTGGTGAAGATGATTATCTTGATGGTC 565
| |||||||| | || |||||||||||||||| |||||||||||| ||||| | |||||
Sbjct 742 CAACAGAGGACGTGACTAGGACGTTTGCTCCTGGTGGTGAAGATGACTATCTCGGTGGTC 801
Query 566 AACGGAAAGTCAACGGCGAGACACCGATCAA-G-TTGGAGGAAGATCCGGCT-CTTACAG 622
||||||||||||||| |||||| || | || | |||||||||||||||||| | | |||
Sbjct 802 AACGGAAAGTCAACGTCGAGACGCC-A-AAACGTTTGGAGGAAGATCCGGCTGC-TCCAG 858
Query 623 GAGGAGGTTCTGATTATCTTAGTGGTGCATCTAATTATCAGTCCAAAGTTACTGATCCCA 682
||||||| || |||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 859 GAGGAGGATCGGATTATCTCAGTGGTGTATCTAATTATCAGTCCAAAGTTACTGATCCCA 918
Query 683 C-CAAAGAAGGAAGTGGAGAAGCTAGAGTACCGGAGATTACTGAGTCTCTTGGTA-ATAT 740
| || | |||| |||||||||| ||||||| |||||| ||||||||||||||| | ||
Sbjct 919 CGCATA-AAGG---TGGAGAAGCTGGAGTACCAGAGATTGCTGAGTCTCTTGGTAGA-AT 973
Query 741 GAAAGTGACTGATGAGTCTCCTGATCAGAAA-CAAGCACAAGGATTTGAAAGA-GACTTG 798
||||||||||||||||||||||||||||||| |||| ||||||| ||| || |||||
Sbjct 974 GAAAGTGACTGATGAGTCTCCTGATCAGAAATCAAG-ACAAGGACGCGAA-GAAGACTT- 1030
Query 799 TC-GACGAGAAGC 810
|| ||||||||||
Sbjct 1031 TCCGACGAGAAGC 1043
Score = 243 bits (131), Expect = 8e-63
Identities = 195/226 (86%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 247 GGTGTAAAAGGTAAACC-AGAGTCTCTGAGTCAT-CCGAGAGAAACTAATGTTCCGGCAG 304
||||||| |||||||| | ||||||| |||||| ||| ||||||||||||||||||||
Sbjct 417 GGTGTAACGGGTAAACCTA-AGTCTCTTAGTCATGCCG-GAGAAACTAATGTTCCGGCAT 474
Query 305 CGGAGGAGATTGTTCCTCCAGGGACAAAGGTGTTTCCTGTCGTGTCTTCCGATTACACCA 364
|||||||||||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct 475 CGGAGGAGATTGTTCCTCCAGGGACAAAAGTTTTTCCTGTCGTGTCTTCTGACCACACCA 534
Query 365 AACCCACTGAATCTGTACCATCACAGGATACCTCTTACGGACACGATGCACCGGCTCATT 424
|||||| ||| ||||| ||| ||| ||||||||||||||||| || |||| |||| ||
Sbjct 535 AACCCATTGAGCCTGTATCATTACAAGATACCTCTTACGGACATGAGGCACTGGCTGATC 594
Query 425 CTGTAAGAACGACGGATACATCGGGCAAGGAAGAGAGCAGAGAGGC 470
|||||||||||||||| ||||||| | ||||| || ||||||||
Sbjct 595 CTGTAAGAACGACGGAAACATCGGACTGGGAAGCGAAAAGAGAGGC 640
Score = 75.0 bits (40), Expect = 3e-12
Identities = 55/62 (89%), Gaps = 1/62 (2%)
Strand=Plus/Plus
Query 2265 GGTGAAGCCGAAATCGCCACATTCCGTTGAAGAGTCTCCACAATCACTTGGCTCAACCGT 2324
||| || ||||| ||||||| |||||||||||||||||||||||||||||| | |||||
Sbjct 1866 GGT-AAACCGAAGTCGCCACGGTCCGTTGAAGAGTCTCCACAATCACTTGGCACCACCGT 1924
Query 2325 TG 2326
||
Sbjct 1925 TG 1926
> AT4G25580.1 | Symbols: | CAP160 protein | chr4:13056184-13058802
FORWARD LENGTH=2162
Length=2162
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 657 TTATCAGTCCAAAGTTACTGATCCCACC 684
||||||||||||||||||||||||||||
Sbjct 943 TTATCAGTCCAAAGTTACTGATCCCACC 970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117670077480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5