BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949794
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52390.1 | Symbols: | PAR1 protein | chr5:21263936-21265264... 870 0.0
> AT5G52390.1 | Symbols: | PAR1 protein | chr5:21263936-21265264
REVERSE LENGTH=1024
Length=1024
Score = 870 bits (471), Expect = 0.0
Identities = 579/630 (92%), Gaps = 11/630 (2%)
Strand=Plus/Plus
Query 2 GTCTCCACTACACATCACAACATGGCTTTGAAGACAGTCTTT-GTTGCTATTACGCTTCT 60
|||| |||| |||||||||||||||||||||||||||| ||| || ||| ||| | ||||
Sbjct 71 GTCTTCACTTCACATCACAACATGGCTTTGAAGACAGT-TTTCGTAGCTTTTATGATTCT 129
Query 61 CCTTGCCATCTATTCGCAAACGACGCTTGGACACGATGTGAAGTGCGAGAATCTGGATGA 120
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 130 CCTTGCCATCTATTCGCAAACGACGTTTGGGGACGATGTGAAGTGCGAGAATCTGGATGA 189
Query 121 AGACACGTGTGCATTCGCGGTCTCGTCCACTGGAAAACGTTGCGTTTTGGAGAAGAGCGT 180
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 190 AAACACGTGTGCCTTCGCGGTCTCGTCCACTGGAAAACGTTGCGTTTTGGAGAAGAGCAT 249
Query 181 GAGGAGGAGCGGGATCGAGGTGTACACATGTCGATCATCGGAGATAGAAGCGGACAAGGT 240
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 250 GAAGAGGAGCGGGATCGAGGTGTACACATGTCGATCATCGGAGATAGAAGCTAACAAGGT 309
Query 241 CACAAACATAATTGAATCAGACGAGTGCATTAAAGCGTGTGGTCTAGACAGGAAATCTTT 300
||||||||| |||||||| |||||||||||||||||||||||||||||| ||||| ||||
Sbjct 310 CACAAACATTATTGAATCGGACGAGTGCATTAAAGCGTGTGGTCTAGACCGGAAAGCTTT 369
Query 301 GGGTATATCTTCGGACGCATTGTTGGAATCCCGGTTTACACAGAAACTGTGCTCGGTTAA 360
||||||||||||||||||||||||||||| | ||| ||||| ||||| |||||||||||
Sbjct 370 AGGTATATCTTCGGACGCATTGTTGGAATCTCAGTTCACACATAAACTCTGCTCGGTTAA 429
Query 361 ATGCTTAAACCAATGCCCTAACGTCGTCGATCTCTTCTTCAACCTTGCTGCTGGCGAAGG 420
||||||||||||||| |||||||| |||||||||| |||||||||||||||||| |||||
Sbjct 430 ATGCTTAAACCAATGTCCTAACGTAGTCGATCTCTACTTCAACCTTGCTGCTGGTGAAGG 489
Query 421 AGTGTATTTGCCAAAGCTATGTGAATCACAAGAAGGGAAGTCAAGAAGAGCAATGTCGGA 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 AGTGTATTTACCAAAGCTATGTGAATCACAAGAAGGGAAGTCAAGAAGAGCAATGTCGGA 549
Query 481 AATTAGGAGCTCGGGAATTGTAATGGACACTCTCGGACCGGTTGGACCGGTTAGGTTGGG 540
|||||||||||||||||||| |||||||||||| | |||||||||||| || | ||||||
Sbjct 550 AATTAGGAGCTCGGGAATTGCAATGGACACTCTTGCACCGGTTGGACCAGTCATGTTGGG 609
Query 541 CGAGATGGCACCGGAGCCGGCTACTTCAATGGAC--CA--C---A--TGCCGGCACCTTC 591
|||||| ||||| ||||||||||||||||||||| || | | |||||||||||||
Sbjct 610 CGAGATAGCACCTGAGCCGGCTACTTCAATGGACAACATGCCTTACGTGCCGGCACCTTC 669
Query 592 ACCGTATTAATTAAGGGAACGGAAAATGGA 621
|||||||||||||||| || ||||||||||
Sbjct 670 ACCGTATTAATTAAGGCAAGGGAAAATGGA 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5