BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949798

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G17360.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   104    8e-22


> AT1G17360.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: COP1-interacting protein-related (TAIR:AT1G72410.1); 
Has 9949 Blast hits to 7480 proteins in 576 species: Archae 
- 12; Bacteria - 1007; Metazoa - 3636; Fungi - 982; Plants 
- 444; Viruses - 50; Other Eukaryotes - 3818 (source: NCBI 
BLink). | chr1:5946764-5951473 FORWARD LENGTH=3530
Length=3530

 Score =  104 bits (56),  Expect = 8e-22
 Identities = 63/66 (95%), Gaps = 1/66 (2%)
 Strand=Plus/Plus

Query  245  AGTTGGAAGCAGCTCGGACATTATATTCTCAAGACGATGGAGGCGTAGCAGATGCAACAA  304
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct  584  AGTTGGAAGCAGCTCGGACATTATATTCTCAAGATGATGGAGGCGTAGCAGATGCAACAC  643

Query  305  ATGAAG  310
            | ||||
Sbjct  644  A-GAAG  648



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22756068591


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5