BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949799

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G17360.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   119    2e-26
  AT1G04810.1 | Symbols:  | 26S proteasome regulatory complex, no...  93.5    1e-18


> AT1G17360.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: COP1-interacting protein-related (TAIR:AT1G72410.1); 
Has 9949 Blast hits to 7480 proteins in 576 species: Archae 
- 12; Bacteria - 1007; Metazoa - 3636; Fungi - 982; Plants 
- 444; Viruses - 50; Other Eukaryotes - 3818 (source: NCBI 
BLink). | chr1:5946764-5951473 FORWARD LENGTH=3530
Length=3530

 Score =  119 bits (64),  Expect = 2e-26
 Identities = 121/146 (83%), Gaps = 14/146 (10%)
 Strand=Plus/Plus

Query  50    TTCTGCAGGGTTTGAACAGAGACAAAAATCATTTGGTGTAGAGGATGATCTTGAGGTAAG  109
             ||||||||||| |||||||||||||||||||||||||||||||||||| ||||   ||| 
Sbjct  1608  TTCTGCAGGGTCTGAACAGAGACAAAAATCATTTGGTGTAGAGGATGACCTTG---TAA-  1663

Query  110   TCTTGTGAATGCAGATTTAGCTGGGAAAAAT-GACAATAATAGAGTTCATTCGACATCCG  168
                    | |||||||  |||||| |||| | ||||| |||||||||| | | ||||| |
Sbjct  1664  -------A-TGCAGATGCAGCTGG-AAAATTTGACAAGAATAGAGTTCGTGCAACATCTG  1714

Query  169   TTGATCAAACACAGAGGACAAGAATG  194
             | ||||||||||||||||||||||||
Sbjct  1715  TGGATCAAACACAGAGGACAAGAATG  1740


> AT1G04810.1 | Symbols:  | 26S proteasome regulatory complex, 
non-ATPase subcomplex, Rpn2/Psmd1 subunit | chr1:1350180-1355442 
FORWARD LENGTH=3311
Length=3311

 Score = 93.5 bits (50),  Expect = 1e-18
 Identities = 63/69 (91%), Gaps = 1/69 (1%)
 Strand=Plus/Plus

Query  221   CTCTCAACCTCAGCTAAAGCCAAAGCTAAGGCTAAGAAAGAAGCAAAGGAGAAAGCTAAT  280
             |||||||||||||| |||||||||||||||||||||||||||||| || |||||||||| 
Sbjct  2651  CTCTCAACCTCAGCCAAAGCCAAAGCTAAGGCTAAGAAAGAAGCAGAGCAGAAAGCTAAA  2710

Query  281   CCTGAGAAA  289
              |||| |||
Sbjct  2711  GCTGA-AAA  2718



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16035411931


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5