BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949801

Length=905
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G52415.1 | Symbols:  | pseudogene, hypothetical protein | ch...   254    1e-66


> AT5G52415.1 | Symbols:  | pseudogene, hypothetical protein | 
chr5:21279904-21281298 FORWARD LENGTH=1395
Length=1395

 Score =  254 bits (137),  Expect = 1e-66
 Identities = 209/242 (86%), Gaps = 12/242 (5%)
 Strand=Plus/Plus

Query  359  TCAAGTGCTTCCTCTCTATC-TATTCGAAATTCCAAAAAATGGATATATCTTCGAGGGGC  417
            |||| ||||||||||| | | ||||||||| |||||||||||||||||| ||||| ||||
Sbjct  647  TCAAATGCTTCCTCTCCA-CTTATTCGAAAATCCAAAAAATGGATATATATTCGACGGGC  705

Query  418  AAAAATGCGAGTTTGGTGTTGAAGTCATGGTTGTTCCACCCCTTACCAATTGGGAAGTC-  476
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  
Sbjct  706  AAAAATGCGAGTTTGGTGTTGAAGTGATGGTTGTTCCACCCCTTACCAATTGGGAAGTGA  765

Query  477  T--CTTTTAATCAGAAACTCTCAACATCCATATTCTCCTGGACTGTCATCTGTCAAGGGT  534
            |  ||||| |||||||||||||| |||||| ||||||||||| || |  |    || |||
Sbjct  766  TGTCTTTTGATCAGAAACTCTCACCATCCACATTCTCCTGGAGTG-C--C----AATGGT  818

Query  535  TTCTCCGTATTGAAAGAGAATCCTTATGTTTCCCCCAACTTTTCAATTGGAGGAAAAGAA  594
            |||||| |||||| |||||||| |||||| ||   |||||||||| ||||||||| ||||
Sbjct  819  TTCTCCTTATTGACAGAGAATCTTTATGTGTCAAACAACTTTTCAGTTGGAGGAAGAGAA  878

Query  595  TG  596
            ||
Sbjct  879  TG  880


 Score =  182 bits (98),  Expect = 7e-45
 Identities = 135/151 (89%), Gaps = 9/151 (6%)
 Strand=Plus/Plus

Query  727   TTAACGTCTGTTACAAGAAATCAACCCAAGGGTGGGGTTGCGAACATTTTGTC-ACTATA  785
             ||||||||||||||||||||||||| |||||||||||||||||| |||||| |  |||||
Sbjct  1250  TTAACGTCTGTTACAAGAAATCAACTCAAGGGTGGGGTTGCGAAGATTTTG-CGGCTATA  1308

Query  786   GCCAATCTGCGGGAG-G--GTTGCTTGGACAATGACACTTTGACATTGGAGGTCGAATTT  842
             ||| |  | |||||| |   || |||||||||||||||||||||||||||||||||||||
Sbjct  1309  GCC-A--T-CGGGAGTGTAATTACTTGGACAATGACACTTTGACATTGGAGGTCGAATTT  1364

Query  843   AAAATTGTTTCTGCAACCAAGTATTCTCACC  873
             ||| |||||||| ||||||||||||||||||
Sbjct  1365  AAAGTTGTTTCTACAACCAAGTATTCTCACC  1395


 Score =  167 bits (90),  Expect = 2e-40
 Identities = 100/105 (95%), Gaps = 0/105 (0%)
 Strand=Plus/Plus

Query  258  GGTTTTATTTCAATGTACGTGGAAATAGACAGCACATCTGAAGTTTTTGCATATGTCAAG  317
            |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  385  GGTTATATTTCAATGTACGTAGAAATAGACAGCACATCTGAAGTTTTTGCATATGTCAAG  444

Query  318  TTCTTCGTCTACAACAAGAACGAACAAAAGTACTTTACTATTCAA  362
            |||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct  445  TTCTTCGTCTACAATAAGAAAGAACAAATGTACTTTACTATTCAA  489


 Score =  163 bits (88),  Expect = 2e-39
 Identities = 127/145 (88%), Gaps = 5/145 (3%)
 Strand=Plus/Plus

Query  117  ACATGCTCAAATCCAACTTCTACGATTGTGAACAGCTTAACGGAACATCCT--CCTTC--  172
            |||||||||||||||||||||||||||| || ||| || ||||||||||||  |||||  
Sbjct  4    ACATGCTCAAATCCAACTTCTACGATTGCGAGCAGTTTCACGGAACATCCTCGCCTTCTT  63

Query  173  -ATATTCCGTCAAGATTGAGAATCTCACATATCTTAAGAATGACAAATACCAATCTCGTC  231
              ||||| |||||||||||||||||| || | ||||| ||||| ||||||||||||||||
Sbjct  64   GCTATTCTGTCAAGATTGAGAATCTCGCACAACTTAACAATGAAAAATACCAATCTCGTC  123

Query  232  GTTTCACGGTAGGCGGGCATAACTG  256
            ||||||||||||||||| || ||||
Sbjct  124  GTTTCACGGTAGGCGGGTATTACTG  148


 Score =  134 bits (72),  Expect = 2e-30
 Identities = 114/133 (86%), Gaps = 7/133 (5%)
 Strand=Plus/Plus

Query  598   TGTCCTTATTTTTGC----ATGTAGCTGATAGTGAAACCCTGTCGGAGGATGATAAGGTT  653
             ||||||||||| |||    || ||||||||||||||||| | ||||||||||| ||| ||
Sbjct  1007  TGTCCTTATTTCTGCATATATATAGCTGATAGTGAAACCTTTTCGGAGGATGAGAAGATT  1066

Query  654   TACGTGCATGCAGATCTCCGAGTATTATTTTGCCCACGTCCACGTCAATACTACAATCAC  713
             ||||||||||||||||||||||||||||    ||||||||||| |  |||| ||||||||
Sbjct  1067  TACGTGCATGCAGATCTCCGAGTATTATA---CCCACGTCCACATGTATACAACAATCAC  1123

Query  714   GTCACACACAAAC  726
             |||||||| ||||
Sbjct  1124  GTCACACAGAAAC  1136



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44206049360


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5