BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949804
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52440.1 | Symbols: HCF106 | Bacterial sec-independent trans... 1321 0.0
> AT5G52440.1 | Symbols: HCF106 | Bacterial sec-independent translocation
protein mttA/Hcf106 | chr5:21286760-21288904 FORWARD
LENGTH=1210
Length=1210
Score = 1321 bits (715), Expect = 0.0
Identities = 795/833 (95%), Gaps = 8/833 (1%)
Strand=Plus/Plus
Query 2 TACAATTTCGAAGCTTCCCATGACCATGGCGTTTCAGATTATAGCTTCTTCTTCTTCTTC 61
||||||||||||||| |||||| |||||||||| |||||||||| |||||||||||||
Sbjct 118 TACAATTTCGAAGCTGCCCATGGCCATGGCGTTACAGATTATAG---CTTCTTCTTCTTC 174
Query 62 ATCACCAACTATTACAAAATCTCACCTTTTCTCTTATCCTCCTCTGCAATCTTGTTATAA 121
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 175 ATCACCAACGATTACAAAATCTCACCTTTTCTCTTATCCTCCTCTGCAATCTCGTTATAA 234
Query 122 AGCTTCGAAACCTAAACTCTCCTCGTGGTTTTCTC-TCATGGGTTCTTCTCCTTTCTCTC 180
||||||||||||||| |||||||| |||||||||| || |||||||||||| ||||||||
Sbjct 235 AGCTTCGAAACCTAACCTCTCCTCATGGTTTTCTCTTC-TGGGTTCTTCTCGTTTCTCTC 293
Query 181 CTTACATTGGTTTAAAGCATTTGGGCATCTCAATCTCTCCTAAATCTTCAAACCCAGAGA 240
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 294 CTTACATTGGTTTAAAGCATTTGGGCATCTCAATCTCGCCGAAATCTTCAAACCCAGAGA 353
Query 241 AGAAGAGAAGATGTAAGAGTATGATGATTCGTGCGTCTTTGTTTGGTGTTGGAGCACCTG 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 354 AGAAGAGAAGATGTAAGAGTATGATGATTCGTGCGTCTCTGTTTGGTGTTGGAGCACCTG 413
Query 301 AGGCTTTGGTTATTGGTGTTGTTGCTTTGTTAGTCTTTGGTCCTAAAGGTCTTGCTGAGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 AGGCTTTGGTTATTGGTGTTGTTGCTTTGTTAGTCTTTGGTCCTAAAGGTCTTGCTGAGG 473
Query 361 TAGCTCGGAATCTTGGAAAAACTCTGCGTACATTTCAGCCAACGATTAGAGAGCTACAAG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 474 TAGCTCGGAATCTTGGAAAAACTCTGCGTACATTTCAGCCAACGATTAGAGAGCTACAGG 533
Query 421 ATGTTTCAAGAGATTTTAAAAGTACCCTTGAGCGTGAAATTGGCCTTGATGAAATCTCAA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 534 ATGTTTCAAGAGATTTTAAAAGTACCCTTGAGCGTGAAATTGGCCTTGATGATATCTCAA 593
Query 481 CGCCAAACGTGTACAACCAAAACAGAACCAATCTTGTTCAACCTCCTCCTCCTCCACCAC 540
|||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 594 CGCCAAACGTGTACAACCAAAACAGAACGAATCCTGTTCAACCTCCTCCTCC---ACCAC 650
Query 541 CACCACCATCAGTTCCTAGCAATGAAGCTCCTGTGACTGCAAATGATCCCAATGATTCAC 600
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 651 CACCACCATCAGTTCCTAGCACTGAAGCTCCTGTGACTGCAAATGATCCCAATGATTCAC 710
Query 601 AATCACCTAAAGCTTACACAACGGAGGATTACTTAAAGATCACTGAAGAGCAGCTAAAAG 660
||||||| |||||||||||| | ||||||||| | ||| |||||||||||||||||||||
Sbjct 711 AATCACCAAAAGCTTACACATCCGAGGATTACCTCAAGTTCACTGAAGAGCAGCTAAAAG 770
Query 661 CTTCGTCTCCCGCTGAAAGCCAAACAGAGGATCAAAATCAGACTCAAGAACCGCTACAAC 720
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 771 CTTTGTCTCCCGCTGAAAGCCAAACAGAGGATCAAACTCAGACTCAAGAACCGCCACAAC 830
Query 721 CCACGAGTGTACAAACACCAACCGGAGAAAGCCAGCCCAATGGTACAACGAGAGAAACAA 780
|||| | |||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 831 CCACAACTGTACAAACACCTACCGGAGAAAGCCAGCCCAATGGTACAGCGAGAGAAACAA 890
Query 781 CAGCTGCATCTCCTCCAAGGCAAGATTGAAAGCACTAAAATATGACTTGTAGT 833
||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 891 CAGCTGCATCTCCTCCAAGGCAAGATTGAAAGCACCAAAATATGACTTGTAGT 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40589190776
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5